Factsheet for PGSC0003DMT400028453

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	mitochondrion

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	34.88	64.29
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	50.39	40.12
CDY19664	Canola	endoplasmic reticulum, plasma membrane	69.77	23.14
HORVU6Hr1G037310.1	Barley	cytosol	62.02	21.39
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	94.57	21.03
VIT_00s0246g00140.t01	Wine grape	plasma membrane	61.24	16.29
KRH28854	Soybean	plasma membrane	24.81	16.24
CDX71645	Canola	plastid	69.77	14.45
ATCG01010.1	Thale cress	plasma membrane	68.99	11.93
PGSC0003DMT400002438	Potato	endoplasmic reticulum	13.18	10.83
PGSC0003DMT400074648	Potato	endoplasmic reticulum	3.88	2.98
PGSC0003DMT400052919	Potato	plasma membrane	4.65	2.26
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
TraesCS6A01G152800.1	Wheat	vacuole	0.0	0.0
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400028453	EnsemblPlantsGene:PGSC0003DMG400010958	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C
InterPro:ND/Mrp_mem	PANTHER:PTHR42829	PANTHER:PTHR42829:SF3	PFAM:PF00361	PFAM:PF01010	PGSC:PGSC0003DMG400010958
TMHMM:TMhelix	UniParc:UPI000296A22D	UniProt:M1AR48	MapMan:35.1	:	:

Description

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400010958]

Coordinates

chr1:+:48367881..48368446

Molecular Weight (calculated)

14685.0 Da

IEP (calculated)

9.620

GRAVY (calculated)

0.194

Length

129 amino acids

Sequence
(BLAST)

001: MGLMGGLRKH VPITKITFLL GTLSLCGIPP LACFWSKDEI LNDSWLYSPI FAIIAWATAG LTAFYMFRIY LLTFEGHLNV HFQNYGGKHK TPFYSISLWG
101: KNGVKKNSCL LTMNNNESTY FFVKNYISN

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.