Factsheet for VIT_00s0246g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	36.08	82.94
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	25.15	75.31
KRH28854	Soybean	plasma membrane	27.01	66.5
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	9.07	62.86
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	74.85	62.59
PGSC0003DMT400028453	Potato	mitochondrion	16.29	61.24
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	14.43	58.33
CDY19664	Canola	endoplasmic reticulum, plasma membrane	46.39	57.84
CDX71645	Canola	plastid	73.2	56.98
Solyc05g013110.1.1	Tomato	vacuole	9.28	52.33
ATCG01010.1	Thale cress	plasma membrane	79.18	51.47
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	11.13	45.38
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	11.55	39.44
Solyc12g033070.1.1	Tomato	extracellular	16.29	36.92
HORVU6Hr1G037310.1	Barley	cytosol	26.39	34.22
TraesCS6A01G152800.1	Wheat	vacuole	6.19	28.3
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.21	1.04

Protein Annotations

MapMan:1.1.8.1.1.6	ProteinID:CCB55908	ProteinID:CCB55908.1	UniProt:F6HMK3	EMBL:FN595993	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0042773	GO:GO:0048038	GO:GO:0055114
InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PFAM:PF00361	PFAM:PF01010
PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829	TIGRFAMs:TIGR01974	TMHMM:TMhelix	UniParc:UPI000210A736
ArrayExpress:VIT_00s0246g00140	EnsemblPlantsGene:VIT_00s0246g00140	EnsemblPlants:VIT_00s0246g00140.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:17191554..17194876

Molecular Weight (calculated)

54796.8 Da

IEP (calculated)

9.449

GRAVY (calculated)

0.486

Length

485 amino acids

Sequence
(BLAST)

001: MVLIYSDNYM SHDQGYLRFI YYMSFFNASM LGLVTSSNLI QIYIFWELVG MCSYLLIGFW FTRPIAANAC KKAFVTNRVG DFGLLLGILG LYWITGSFEF
101: RDLFEIFNNL IYNNGTNFLF VSLCALFLFV GTVAKSAQFP LHVWLPDAME GPTPISALIH AATMVATGIF LVARLFPLFI VIPYIMNLIS LIGIITILLG
201: ATLALAQKDI KKSLAYSTMS QLGYTMLALG MGSYQAALFH LITHAYSKAL LFLGSGSIIH SMEAIVGYSP DKSKNMVLMG GLTKHVPITK NTFLLGTLSL
301: CGIPPLACFW SKDEILNDSW LYSPIFAIIA CLTTGLTAFY MFRIYLLTFE GYFNVHCKNY SGKKVACSIQ YLYGVKKVKK QLKKNAMDFD ILSKWLNPAT
401: NLLHKNLNNY GDWYEFVKNA IFSVSISYFG IFLASLLYNP VYSSLQNLDL INSVAKKVPK RIFWDKIINK VYNWSYNRGY IDGYK

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.