Factsheet for Solyc12g033000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 4
endoplasmic reticulum 4
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g033070.1.1	Tomato	extracellular	86.62	57.48
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	22.54	45.71
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	28.87	34.17
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	33.1	29.01
CDY19664	Canola	endoplasmic reticulum, plasma membrane	36.62	13.37
VIT_00s0246g00140.t01	Wine grape	plasma membrane	39.44	11.55
KRH28854	Soybean	plasma membrane	14.79	10.66
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	9.15	10.66
CDX71645	Canola	plastid	39.44	8.99
ATCG01010.1	Thale cress	plasma membrane	41.55	7.91
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	8.45	5.69
Solyc03g061580.1.1	Tomato	plastid	2.11	3.41
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	4.23	1.99
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.0	0.0
TraesCS6A01G152800.1	Wheat	vacuole	0.0	0.0
Solyc05g013110.1.1	Tomato	vacuole	0.0	0.0
Solyc03g013620.1.1	Tomato	plasma membrane	0.0	0.0
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	0.0	0.0
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc01g017090.2.1	Tomato	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006139
GO:GO:0006464	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009522	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538
GO:GO:0022900	GO:GO:0042773	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	InterPro:IPR036408	UniProt:K4DDW8	PFAM:PF00223	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf
PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	EnsemblPlantsGene:Solyc12g033000.1	EnsemblPlants:Solyc12g033000.1.1	TMHMM:TMhelix
UniParc:UPI0002769CF7	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:61002716..61003194

Molecular Weight (calculated)

16247.1 Da

IEP (calculated)

9.422

GRAVY (calculated)

0.663

Length

142 amino acids

Sequence
(BLAST)

001: MFLFGHPVWA TGFMFLISWR GYWQKLIETL AWAHEHIPLA NLIRWRDKLV ALSIVQARLV GLAHFSVGYI LTYAAFLTAS TSGLKKHVPP LACFLSKDEI
101: FNDSLLYLPI FAIIAWATAG LTAFYIFRIY LLTFEGHLNA HF

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.