Factsheet for Solyc04g024570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 5
extracellular 4
endoplasmic reticulum 6
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g013620.1.1	Tomato	plasma membrane	44.37	83.75
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	18.21	79.71
Solyc01g017090.2.1	Tomato	plasma membrane	47.35	72.96
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	37.75	54.03
HORVU5Hr1G005440.1	Barley	plasma membrane	62.58	51.36
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	18.87	47.9
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	11.26	27.87
CAA33950	Rice	plasma membrane	62.91	25.89
GRMZM5G894515_P01	Maize	plastid	62.91	25.75
Solyc05g013110.1.1	Tomato	vacuole	6.95	24.42
Solyc03g061580.1.1	Tomato	plastid	4.64	15.91
TraesCS4A01G141100.1	Wheat	plastid	5.63	8.72
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	2.32	4.32
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	1.99	4.23
Solyc12g033070.1.1	Tomato	extracellular	2.65	3.74
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	1.32	3.33

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006091	GO:GO:0006139	GO:GO:0006412	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0019538	GO:GO:0042773	GO:GO:0048038
GO:GO:0055114	UniProt:K4BQQ6	InterPro:NA-bd_OB-fold	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PFAM:PF00164
PFAM:PF00361	PFAM:PF00662	PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829	InterPro:Proton_antipo_N
InterPro:Ribosomal_S12/S23	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc04g024570.1	EnsemblPlants:Solyc04g024570.1.1	TMHMM:TMhelix	UniParc:UPI00027657F6

Description

No Description!

Coordinates

chr4:-:30142203..30143610

Molecular Weight (calculated)

34984.0 Da

IEP (calculated)

7.038

GRAVY (calculated)

0.575

Length

302 amino acids

Sequence
(BLAST)

001: MEHIYEYEWI IPFIPLPVPM LIGAGFILFP TATKRIRHMW AFQSVLLLSI AMIFSIYLSI QQINSSSVYQ YAWSWIINND FYLDFGYLID PLTSIMSILI
101: TTVGIMDLIY SDNYMAHDQG YLRFFAYMSF FSTSMLGLVT SLNLIQIYIF WELVGWFLSI NWIWFTRPVA ANACQKAFIM GSFEFRDLFE IFNNLIYNNE
201: LNFLFVTLCI VLLFANAVAK SAQFPLHVWV PDSMEGPTPI SALIHAATML AAKFFLSVSK GDFSVNFSTI TPKKPNFALR KVARVRLTCR FEITAYIPQY
301: WP

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.