CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50802	Barley	plastid	92.1	91.47
HORVU0Hr1G025220.1	Barley	endoplasmic reticulum, plasma membrane	92.1	91.47
HORVU0Hr1G036330.1	Barley	endoplasmic reticulum, plasma membrane	92.1	91.47
HORVU1Hr1G048170.1	Barley	endoplasmic reticulum, plasma membrane	92.1	91.47
TraesCS4A01G141100.1	Wheat	plastid	24.11	90.77
GRMZM5G894515_P01	Maize	plastid	90.74	90.24
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	7.77	82.61
HORVU2Hr1G044770.1	Barley	plasma membrane	46.32	81.93
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	12.81	77.05
Solyc01g017090.2.1	Tomato	plasma membrane	20.57	77.04
Solyc03g013620.1.1	Tomato	plasma membrane	14.99	68.75
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	25.89	62.91
PGSC0003DMT400052919	Potato	plasma membrane	18.12	50.19

Protein Annotations

MapMan:1.1.8.1.1.6	EnsemblPlants:CAA33950	EnsemblPlantsGene:CAA33950	ProteinID:CAA33950	ProteinID:CAA33950.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006139	GO:GO:0006810
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0042773
GO:GO:0048038	GO:GO:0055114	GO:GO:0070469	InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5	InterPro:NADHpl_OxRdtase_5_subgr
InterPro:ND/Mrp_mem	PFAM:PF00361	PFAM:PF00662	PFAM:PF01010	PRINTS:PR01434	PRINTS:PR01435
PANTHER:PTHR42829	InterPro:Proton_antipo_N	Reactome:R-HSA-611105	Reactome:R-HSA-6799198	TIGRFAMs:TIGR01974	TMHMM:TMhelix
UniParc:UPI00001307BB	SEG:seg	:	:	:	:

Description

ndhFNADH dehydrogenase ND5

Coordinates

chrPt:-:101433..103637

Molecular Weight (calculated)

82602.6 Da

IEP (calculated)

8.469

GRAVY (calculated)

0.611

Length

734 amino acids

Sequence
(BLAST)

001: MEHTYQYAWV IPLLPLPVIM SMGFGLFLVP TATKNLRRIW AFPSVLLLSI AMVFSVHLSI QQINGSSIYQ YLWSWTVNND FSLEFGYLID PLTSIMLILI
101: TTVGILVLIY SDDYMSHDEG YLRFFVYISF FNTSMLGLVT SSNLIQIYFF WELVGMCSYL LIGFWFTRPI AASACQKAFV TNRVGDFGLL LGILGFFWIT
201: GSLEFRDLFK IANNWIPNNE INSLLTILCA FLLFLGAVAK SAQFPLHVWL PDAMEGPTPI SALIHATTMV AAGIFLIARL LPLFISLPLI MSFISLIGTL
301: TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA YSKALLFLGS GSVIHSMEPL VGYSPDKSQN MVLMGGLRKY IPITRTCFLW
401: GTLSLCGIPP LACFWSKDEI LSNSWLYSPF FGIIASFTAG LTAFYMFRIY LLTFDGYLRV HFQNYSSTKE DSLYSISLWG KRISKGVNRD FVLSTAKSGV
501: SFFSQNLSKI HVNTGNRIGS FSTSLGTKNT FVYPHEPGNT MLFPLLILLL CTLFIGSIGI HFDNEIGELT ILSKWLTPSI NFFQESSNSS INSYEFITNA
601: ISSVSLAIFG LFIGIYVLWI CLLFFSEFDL INSFVKGGPK KYFFHQLKKK IYSWSYNRGY IDIFYTRTFT LGIRGLTELT QFFDKGVIDG ITNGVGLASF
701: CIGEEIKYVG GGRISSYLFF FLCYVSVFLF FFLS

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.