Factsheet for Solyc03g013620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
vacuole 5
extracellular 4
endoplasmic reticulum 5
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	33.12	76.81
Solyc01g017090.2.1	Tomato	plasma membrane	81.25	66.33
PGSC0003DMT400052919	Potato	plasma membrane	75.0	45.28
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	83.75	44.37
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	26.25	35.29
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	22.5	17.06
CAA33950	Rice	plasma membrane	68.75	14.99
GRMZM5G894515_P01	Maize	plastid	68.12	14.77
Solyc05g013110.1.1	Tomato	vacuole	2.5	4.65
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc03g061580.1.1	Tomato	plastid	0.0	0.0
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	0.0	0.0
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	0.0	0.0
HORVU2Hr1G044830.1	Barley	endoplasmic reticulum	0.0	0.0
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	0.0	0.0
Solyc12g033070.1.1	Tomato	extracellular	0.0	0.0
TraesCS4A01G141100.1	Wheat	plastid	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0042773	GO:GO:0055114	UniProt:K4BET3	InterPro:NADHpl_OxRdtase_5_subgr	PFAM:PF00662
PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829	InterPro:Proton_antipo_N	EnsemblPlantsGene:Solyc03g013620.1	EnsemblPlants:Solyc03g013620.1.1
TMHMM:TMhelix	UniParc:UPI000276870C	:	:	:	:

Description

No Description!

Coordinates

chr3:-:44112010..44112492

Molecular Weight (calculated)

18642.1 Da

IEP (calculated)

4.879

GRAVY (calculated)

0.845

Length

160 amino acids

Sequence
(BLAST)

001: MERAYEYAWI IPFITLLVPM LIGAGLILFP TATKRFRRMW AFQSVLLLSI VVIFSIYLSI HQINSSSVYQ YVWAWIINID FSLDFGYLID PLTSIMSILI
101: TTVGIMVLIY SDNYMAHDQG YLRFFAYMSF FSTSMLGLVT SSNLIQIYIF ENWLDCVPIY

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.