Factsheet for Solyc01g017090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g013620.1.1	Tomato	plasma membrane	66.33	81.25
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	28.06	79.71
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	35.2	57.98
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	72.96	47.35
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	26.53	24.64
CAA33950	Rice	plasma membrane	77.04	20.57
GRMZM5G894515_P01	Maize	plastid	76.53	20.33
Solyc05g013110.1.1	Tomato	vacuole	3.57	8.14
HORVU2Hr1G044830.1	Barley	endoplasmic reticulum	0.0	0.0
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	0.0	0.0
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc03g061580.1.1	Tomato	plastid	0.0	0.0
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	0.0	0.0
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	0.0	0.0
Solyc12g033070.1.1	Tomato	extracellular	0.0	0.0
TraesCS4A01G141100.1	Wheat	plastid	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0042773	GO:GO:0055114	UniProt:K4AUP0	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem
PFAM:PF00361	PFAM:PF00662	PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829	InterPro:Proton_antipo_N
EnsemblPlantsGene:Solyc01g017090.2	EnsemblPlants:Solyc01g017090.2.1	TMHMM:TMhelix	UniParc:UPI0002762919	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:23876221..23876888

Molecular Weight (calculated)

22766.3 Da

IEP (calculated)

6.509

GRAVY (calculated)

0.766

Length

196 amino acids

Sequence
(BLAST)

001: MEHTYEYAWI IPFISFPVPM LIGAGLILFP TATKRFRRMW AFQSVLLLFI VMMFSIYLSI QQINSSSVYQ YVWSWIINND FSLDIGYLID PLTSIMSILF
101: TTVGIMVLIY NDKYMAHDQG YLRFFSYISF FNTSMLVLLT SSNLIQIYMF WELVGLGSYL LVGFWFIRPI AANACQKEFV TNRVGDFGLL LGILGF

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.