Factsheet for Solyc05g013110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	41.86	17.06
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	25.58	13.58
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	16.28	11.48
Solyc03g061580.1.1	Tomato	plastid	11.63	11.36
CDY19664	Canola	endoplasmic reticulum, plasma membrane	43.02	9.51
VIT_00s0246g00140.t01	Wine grape	plasma membrane	52.33	9.28
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	6.98	8.7
CDX71645	Canola	plastid	55.81	7.7
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	24.42	6.95
ATCG01010.1	Thale cress	plasma membrane	55.81	6.43
Solyc01g017090.2.1	Tomato	plasma membrane	8.14	3.57
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	4.65	3.36
Solyc03g013620.1.1	Tomato	plasma membrane	4.65	2.5
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	2.33	2.08
TraesCS6A01G152800.1	Wheat	vacuole	2.33	1.89
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	0.0	0.0
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	0.0	0.0
Solyc12g033070.1.1	Tomato	extracellular	0.0	0.0
HORVU6Hr1G037310.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc05g013110.1.1	EnsemblPlantsGene:Solyc05g013110.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:ND/Mrp_mem
PANTHER:PTHR42829	PANTHER:PTHR42829:SF3	PFAM:PF00361	TMHMM:TMhelix	UniParc:UPI0002765CB8	UniProt:K4BY32
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:6188832..6189092

Molecular Weight (calculated)

9796.5 Da

IEP (calculated)

7.670

GRAVY (calculated)

1.152

Length

86 amino acids

Sequence
(BLAST)

1: MRSIFNLLRY VLFSYLSVQL LYLPDSPFIY GLPDAIEGHP PISSLIHATT MVAARIFLIA RLLPLFIVIP YIMYLISILE LITVLS

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.