Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71645 | Canola | plastid | 79.49 | 95.18 |
| CDY19664 | Canola | endoplasmic reticulum, plasma membrane | 48.39 | 92.8 |
| Solyc11g021190.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 23.86 | 84.36 |
| VIT_00s0246g00140.t01 | Wine grape | plasma membrane | 51.47 | 79.18 |
| PGSC0003DMT400074606 | Potato | endoplasmic reticulum, extracellular | 57.37 | 73.79 |
| Solyc02g011710.1.1 | Tomato | endoplasmic reticulum, extracellular | 15.82 | 72.84 |
| VIT_00s0246g00150.t01 | Wine grape | endoplasmic reticulum, extracellular | 9.25 | 71.88 |
| PGSC0003DMT400028453 | Potato | mitochondrion | 11.93 | 68.99 |
| KRH28854 | Soybean | plasma membrane | 17.96 | 68.02 |
| TraesCS6A01G152800.1 | Wheat | vacuole | 9.12 | 64.15 |
| Solyc05g013100.1.1 | Tomato | golgi, mitochondrion, plastid | 10.05 | 62.5 |
| KRH03697 | Soybean | endoplasmic reticulum, plasma membrane | 5.63 | 60.0 |
| Solyc02g011720.1.1 | Tomato | endoplasmic reticulum, extracellular | 9.52 | 59.66 |
| Solyc05g013110.1.1 | Tomato | vacuole | 6.43 | 55.81 |
| HORVU6Hr1G037310.1 | Barley | cytosol | 27.88 | 55.62 |
| Solyc12g033000.1.1 | Tomato | endoplasmic reticulum | 7.91 | 41.55 |
| Solyc12g033070.1.1 | Tomato | extracellular | 11.53 | 40.19 |
| ATMG00513.1 | Thale cress | extracellular, plasma membrane, vacuole | 23.46 | 36.31 |
Protein Annotations
| MapMan:1.1.8.1.1.6 | EntrezGene:844705 | UniProt:A0A1B1W4Y7 | ProteinID:AAF90035.1 | ProteinID:ANW47836.1 | ArrayExpress:ATCG01010 |
| EnsemblPlantsGene:ATCG01010 | RefSeq:ATCG01010 | TAIR:ATCG01010 | RefSeq:ATCG01010-TAIR-G | EnsemblPlants:ATCG01010.1 | TAIR:ATCG01010.1 |
| ProteinID:BAA84434.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006139 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0042773 | GO:GO:0048038 | GO:GO:0055114 |
| InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C | InterPro:NADHpl_OxRdtase_5 | InterPro:NADHpl_OxRdtase_5_subgr | InterPro:ND/Mrp_mem | Symbol:NDHF | RefSeq:NP_051106.1 |
| UniProt:P56752 | PFAM:PF00361 | PFAM:PF00662 | PFAM:PF01010 | PRINTS:PR01434 | PRINTS:PR01435 |
| PANTHER:PTHR42829 | InterPro:Proton_antipo_N | TIGRFAMs:TIGR01974 | TMHMM:TMhelix | UniParc:UPI00001307A4 | SEG:seg |
Description
NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
Coordinates
chrPt:-:110398..112638
Molecular Weight (calculated)
85243.3 Da
IEP (calculated)
9.110
GRAVY (calculated)
0.577
Length
746 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.