CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19664	Canola	endoplasmic reticulum, plasma membrane	62.28	99.74
ATCG01010.1	Thale cress	plasma membrane	95.18	79.49
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	25.04	73.93
VIT_00s0246g00140.t01	Wine grape	plasma membrane	56.98	73.2
PGSC0003DMT400028453	Potato	mitochondrion	14.45	69.77
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	59.87	64.31
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	16.69	64.2
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	11.88	61.67
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	11.56	60.5
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	6.58	58.57
KRH28854	Soybean	plasma membrane	18.14	57.36
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	8.83	57.29
Solyc05g013110.1.1	Tomato	vacuole	7.7	55.81
TraesCS6A01G152800.1	Wheat	vacuole	9.31	54.72
HORVU6Hr1G037310.1	Barley	cytosol	26.81	44.65
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	8.99	39.44
Solyc12g033070.1.1	Tomato	extracellular	13.48	39.25
CDY45521	Canola	endoplasmic reticulum	26.0	31.03

Protein Annotations

KEGG:00624+1.6.5.-	MapMan:35.1	GO:A0A078C495	EnsemblPlants:CDX71645	ProteinID:CDX71645	ProteinID:CDX71645.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0042773	GO:GO:0048038	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00152257001
InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PFAM:PF00361	PFAM:PF00662
PFAM:PF01010	PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829	InterPro:Proton_antipo_N	TIGRFAMs:TIGR01974
TMHMM:TMhelix	UniParc:UPI0004EDCCB7	SEG:seg	:	:	:

Description

BnaC09g26860D

Coordinates

chrLK031794:+:2156274..2159410

Molecular Weight (calculated)

70811.3 Da

IEP (calculated)

8.548

GRAVY (calculated)

0.525

Length

623 amino acids

Sequence
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGAGLLLFP TATKNLRRMW TFLSIFFCIH QNVWSWTINN EFSFEFGYFI DPLTSIMSIL ITTVGILVLI YSDNYMSHDQ
101: GYLRFFAYMG FFNTSMLGLV TSSNLIQVYF FWELVGMCSY LLIGFWFTRP IAANACQKAF VTNRVGDFGL LLGILGLYWI TGSFEFQDLF EIFNNLILNN
201: RINLLFLTLC AFLLFVGPIA KSAQFPLHVW LPDAMEGPTP ISALIHAATM VAAGIFLVAR LLPLFIVIPS IMYIISLIGI ITVLLGATLA LAQKDIKRGL
301: AYSTMSQLGY MMLALGSGSI IHSMEAIVGY SPDKSQNMIL MGGLTKHVPI TKTAFLVGTL SLCGIPPLAC FWSKDEILND SLLFSPIFAI IACSTAGLTA
401: FYMFRIYLLT FEGHLNTYFI NYSGKKSSSF YSISLWGKEE DKKLNRNFGL VPLLTMNNTK RASFFGNKTY KISNNVRNQT FITVENFGLN TRTFYYPHES
501: DNTILFPMLV LLLFTLFIGA IGIPFNQEGI DFDILSKLLT PSINLLHTNS ENFVDWYEFL KNAIFSVSIA LFGIFIAYCL YKPFYSSRLN LTLLNSFQKW
601: SSKRIRWEKP INFVYNCKTN EFF

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.