Factsheet for PGSC0003DMT400074606

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 5
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028453	Potato	mitochondrion	21.03	94.57
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	30.86	84.83
VIT_00s0246g00140.t01	Wine grape	plasma membrane	62.59	74.85
CDY19664	Canola	endoplasmic reticulum, plasma membrane	46.38	69.15
KRH28854	Soybean	plasma membrane	22.59	66.5
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	7.76	64.29
CDX71645	Canola	plastid	64.31	59.87
ATCG01010.1	Thale cress	plasma membrane	73.79	57.37
HORVU6Hr1G037310.1	Barley	cytosol	33.1	51.34
PGSC0003DMT400002438	Potato	endoplasmic reticulum	13.45	49.68
PGSC0003DMT400074648	Potato	endoplasmic reticulum	14.14	48.81
PGSC0003DMT400052919	Potato	plasma membrane	8.62	18.87
TraesCS6A01G152800.1	Wheat	vacuole	2.07	11.32
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.17	1.04

Protein Annotations

MapMan:1.1.8.1.1.6	EntrezGene:4099901	wikigene:4099901	ProteinID:AAL01647	ProteinID:AAL01647.1	ProteinID:ABB90085
ProteinID:ABB90085.1	ProteinID:ABD47104	ProteinID:ABD47104.1	ProteinID:AEB72186	ProteinID:AEB72186.1	ProteinID:AEB72272
ProteinID:AEB72272.1	EMBL:DQ231562	EMBL:DQ386163	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0042773
GO:GO:0048038	GO:GO:0055114	EMBL:JF772170	EMBL:JF772171	EMBL:L76287	UniProt:M1CTY0
InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PFAM:PF00361	PFAM:PF01010
EnsemblPlantsGene:PGSC0003DMG400029008	PGSC:PGSC0003DMG400029008	EnsemblPlants:PGSC0003DMT400074606	PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829
TIGRFAMs:TIGR01974	TMHMM:TMhelix	UniParc:UPI0002954AC6	EntrezGene:ndhF	wikigene:ndhF	SEG:seg

Description

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400029008]

Coordinates

chr9:+:35544701..35546443

Molecular Weight (calculated)

65145.2 Da

IEP (calculated)

9.543

GRAVY (calculated)

0.442

Length

580 amino acids

Sequence
(BLAST)

001: MLGLVTSSNL IQIYIFWELV GLCSYLLIGF WFTRPVAANA CQKAFVTNRV GDFGLLLGIL GFYWITGSFE FRDLFEIFNN LIYNNEVNFL FVTLCAVLLF
101: AGAVAKSAQF PLHVWLPDAM EGPTPISALI HAATMVAAGI FLVARLLPLF RVIPYIMYLI SVIGIITVLL GATLALAQKD IKRGLAYSTM SQLGYMMLAL
201: GMGSYRSALF HLITHAYSKA LLFLGSGSII HSMETIVGYS PAKSQNMGLM GGLRKHVPIT KITFLLGTLS LCGIPPLACF WSKDEILNDS WLYSPIFAII
301: AWATAGLTAF YMFRIYLLTF EGHLNVHFQN YGGKHKTPFY SISLWGKNGV KKNSCLLTMN NNESTYFLSK TKYPIDKNGR KMTRPFMTIA HFEHKAVSSY
401: PYESDNTMLF PIFVLGLFTL FVGAIGIPFN QEGVNLDILS KWLAPSINLL HPKSNNSQDW NEFLKDAVVS VSIAYFGIFI ASFLYKPIYS SLKNLEFINS
501: FVKKGPKRIL WDKILNGIYD WSYNRAYIDA FYTRFFVGGI RGLAEFTHFF DRRVIDGMTN GVGVISFIVG EGIKYIFSNQ

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.