Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002438 | Potato | endoplasmic reticulum | 66.07 | 70.7 |
| KXG30817 | Sorghum | plastid | 36.31 | 64.21 |
| HORVU5Hr1G072300.1 | Barley | vacuole | 77.38 | 41.53 |
| KRG88442 | Soybean | cytosol, mitochondrion, vacuole | 57.14 | 41.2 |
| TraesCS3A01G181300.1 | Wheat | golgi | 82.14 | 39.43 |
| HORVU3Hr1G004710.1 | Barley | plasma membrane | 85.12 | 35.84 |
| HORVU0Hr1G034160.1 | Barley | vacuole | 85.12 | 35.84 |
| HORVU4Hr1G024000.1 | Barley | plasma membrane | 83.33 | 35.09 |
| HORVU4Hr1G023920.1 | Barley | plasma membrane | 82.14 | 34.59 |
| GRMZM5G834128_P01 | Maize | plasma membrane | 85.12 | 29.61 |
| ATMG00513.1 | Thale cress | extracellular, plasma membrane, vacuole | 83.93 | 29.25 |
| HORVU3Hr1G045020.1 | Barley | endoplasmic reticulum | 28.57 | 27.27 |
| CDY45521 | Canola | endoplasmic reticulum | 83.93 | 27.01 |
| KRH12694 | Soybean | peroxisome, plasma membrane, plastid | 57.14 | 26.23 |
| KRH12696 | Soybean | endoplasmic reticulum | 57.14 | 25.07 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane, plastid | 73.21 | 23.38 |
| PGSC0003DMT400074606 | Potato | endoplasmic reticulum, extracellular | 48.81 | 14.14 |
| PGSC0003DMT400052919 | Potato | plasma membrane | 8.33 | 5.28 |
| PGSC0003DMT400028453 | Potato | mitochondrion | 2.98 | 3.88 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074648 | EnsemblPlantsGene:PGSC0003DMG400029023 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:ND/Mrp_mem |
| PANTHER:PTHR42829 | PANTHER:PTHR42829:SF2 | PFAM:PF00361 | PGSC:PGSC0003DMG400029023 | PRINTS:PR01434 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI00029690B3 | UniProt:M1CTZ9 | MapMan:35.1 | : | : |
Description
NADH dehydrogenase subunit 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400029023]
Coordinates
chr11:-:10384976..10385482
Molecular Weight (calculated)
18341.9 Da
IEP (calculated)
8.871
GRAVY (calculated)
0.702
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLNAITLIC ILFFIGAVGK SAQIGSHTWS PDVMEGLTSV SALIHAATMV TAGIFMIARF SPLFVYPHTA LIVITFAGAM TSFLAATTGI LQNDLKRVIA
101: YSTCSQLGYM IFACGISNYS VSVFHLMNHT FFKALLFLSA DSVIHVMSDE QDMRKMGRLP PRSLLPMP
101: YSTCSQLGYM IFACGISNYS VSVFHLMNHT FFKALLFLSA DSVIHVMSDE QDMRKMGRLP PRSLLPMP
001: MYLLIVFLPL LGSSVAGFFG RFLGSEGSAI MTTTCVSFSS ILSLIAFYEV APGASACYLR IAPWISSEMF DASWGFLFDS PTVVMLIVVT SISSLVHLYS
101: ISYMSEDPHS PRFMCYLSIL TFFMPMLVTG DNSLQLFLGW EGVGLASYLL IHFWFTRLQA DKAATKAMLV NRVGDFGLAL GISGRFTLFQ TVDFSTIFAR
201: ASAPRNSWIS CNMRLNAISL ICILLLIGAV GKSAQIGSHT WSPDAMEGPT PVSASIHAAT MVTAGVFMIA RCSPLFEYPP TALIVITSAG ATTSFLAATT
301: GILQNDLKRV IAYSTCSQLG YMIFACGISN YSVSVFHLMN HAFFKALLFL SAGSVIHAMS DEQDMRKMGG LASSFPLTYA MMLIGSLSLI GFPFLTGFYS
401: KDVILELAYT KYTISGNFAF WLGSVSVLFT SYYSFRLLFL TFLVPTNSFG RDISRCHDAP IPMAIPLILL ALGSLFVGYL AK
101: ISYMSEDPHS PRFMCYLSIL TFFMPMLVTG DNSLQLFLGW EGVGLASYLL IHFWFTRLQA DKAATKAMLV NRVGDFGLAL GISGRFTLFQ TVDFSTIFAR
201: ASAPRNSWIS CNMRLNAISL ICILLLIGAV GKSAQIGSHT WSPDAMEGPT PVSASIHAAT MVTAGVFMIA RCSPLFEYPP TALIVITSAG ATTSFLAATT
301: GILQNDLKRV IAYSTCSQLG YMIFACGISN YSVSVFHLMN HAFFKALLFL SAGSVIHAMS DEQDMRKMGG LASSFPLTYA MMLIGSLSLI GFPFLTGFYS
401: KDVILELAYT KYTISGNFAF WLGSVSVLFT SYYSFRLLFL TFLVPTNSFG RDISRCHDAP IPMAIPLILL ALGSLFVGYL AK
Arabidopsis Description
NAD5ANADH dehydrogenase 5A [Source:TAIR;Acc:ATMG00513]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.