Factsheet for PGSC0003DMT400002438

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 4
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g061580.1.1	Tomato	plastid	47.77	85.23
PGSC0003DMT400074648	Potato	endoplasmic reticulum	70.7	66.07
KXG30817	Sorghum	plastid	38.22	63.16
KRG88442	Soybean	cytosol, mitochondrion, vacuole	78.34	52.79
HORVU5Hr1G072300.1	Barley	vacuole	82.8	41.53
TraesCS3A01G181300.1	Wheat	golgi	88.53	39.71
HORVU3Hr1G004710.1	Barley	plasma membrane	91.08	35.84
HORVU0Hr1G034160.1	Barley	vacuole	91.08	35.84
HORVU4Hr1G024000.1	Barley	plasma membrane	89.81	35.34
HORVU4Hr1G023920.1	Barley	plasma membrane	86.62	34.09
KRH12694	Soybean	peroxisome, plasma membrane, plastid	78.34	33.61
KRH12696	Soybean	endoplasmic reticulum	78.34	32.11
GRMZM5G834128_P01	Maize	plasma membrane	91.08	29.61
ATMG00513.1	Thale cress	extracellular, plasma membrane, vacuole	89.17	29.05
CDY45521	Canola	endoplasmic reticulum	89.17	26.82
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane, plastid	76.43	22.81
HORVU3Hr1G045020.1	Barley	endoplasmic reticulum	18.47	16.48
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	49.68	13.45
PGSC0003DMT400028453	Potato	mitochondrion	10.83	13.18
PGSC0003DMT400052919	Potato	plasma membrane	11.46	6.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400002438	EnsemblPlantsGene:PGSC0003DMG400000928	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:ND/Mrp_mem
PANTHER:PTHR42829	PANTHER:PTHR42829:SF2	PFAM:PF00361	PGSC:PGSC0003DMG400000928	PRINTS:PR01434	TMHMM:TMhelix
UniParc:UPI0002969BEF	UniProt:M0ZK42	MapMan:35.1	:	:	:

Description

NADH dehydrogenase subunit 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400000928]

Coordinates

chr7:-:42542805..42543278

Molecular Weight (calculated)

17052.4 Da

IEP (calculated)

6.925

GRAVY (calculated)

0.815

Length

157 amino acids

Sequence
(BLAST)

001: MEGPTPVSAL IHAATMVTTG VFMIAMCFPL FDYPPTALIV ITFAGAMTSV LAATTGILQN DLKRVIAYST CSQLGYMIFT CGITNYSVSV FHLMNHAFFK
101: ALLFLSAGSV IHAMSDEQDM RKMGGLASLF PFTYAMMLMG SLSLIGFPFL TEFIPKM

Best Arabidopsis Sequence Match ( ATMG00513.1 )
(BLAST)

001: MYLLIVFLPL LGSSVAGFFG RFLGSEGSAI MTTTCVSFSS ILSLIAFYEV APGASACYLR IAPWISSEMF DASWGFLFDS PTVVMLIVVT SISSLVHLYS
101: ISYMSEDPHS PRFMCYLSIL TFFMPMLVTG DNSLQLFLGW EGVGLASYLL IHFWFTRLQA DKAATKAMLV NRVGDFGLAL GISGRFTLFQ TVDFSTIFAR
201: ASAPRNSWIS CNMRLNAISL ICILLLIGAV GKSAQIGSHT WSPDAMEGPT PVSASIHAAT MVTAGVFMIA RCSPLFEYPP TALIVITSAG ATTSFLAATT
301: GILQNDLKRV IAYSTCSQLG YMIFACGISN YSVSVFHLMN HAFFKALLFL SAGSVIHAMS DEQDMRKMGG LASSFPLTYA MMLIGSLSLI GFPFLTGFYS
401: KDVILELAYT KYTISGNFAF WLGSVSVLFT SYYSFRLLFL TFLVPTNSFG RDISRCHDAP IPMAIPLILL ALGSLFVGYL AK

Arabidopsis Description

NAD5ANADH dehydrogenase 5A [Source:TAIR;Acc:ATMG00513]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.