CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	41.12	50.0
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	39.59	36.97
CDY19664	Canola	endoplasmic reticulum, plasma membrane	55.84	28.28
VIT_00s0246g00140.t01	Wine grape	plasma membrane	66.5	27.01
KRG88442	Soybean	cytosol, mitochondrion, vacuole	31.47	26.61
PGSC0003DMT400028453	Potato	mitochondrion	16.24	24.81
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	66.5	22.59
CDX71645	Canola	plastid	57.36	18.14
ATCG01010.1	Thale cress	plasma membrane	68.02	17.96
KRH12694	Soybean	peroxisome, plasma membrane, plastid	30.46	16.39
KRH12696	Soybean	endoplasmic reticulum	30.96	15.93
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	10.66	14.79
Solyc12g033070.1.1	Tomato	extracellular	15.23	14.02
HORVU6Hr1G037310.1	Barley	cytosol	20.3	10.7
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	3.55	10.0
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	1.02	1.68
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.51	1.04
TraesCS6A01G152800.1	Wheat	vacuole	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A0R0HE12	EMBL:ACUP02006767	EnsemblPlantsGene:GLYMA_11G081100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0042773	GO:GO:0048038	GO:GO:0055114	EnsemblPlants:KRH28854	ProteinID:KRH28854	ProteinID:KRH28854.1
InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PFAM:PF00361	PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829
PANTHER:PTHR42829:SF3	TMHMM:TMhelix	UniParc:UPI0006EE0B1C	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:6090248..6091010

Molecular Weight (calculated)

21754.4 Da

IEP (calculated)

8.738

GRAVY (calculated)

0.778

Length

197 amino acids

Sequence
(BLAST)

001: MVTIWFSCHA QCILPCNNLI KPDTQTDKPL SPISALIHAA IMVAVGIFLV ARLLPLFIVL IAIMNEVAFI GIIRIVLGAT LAIAQQDINK NLAYFTKSQL
101: GYMMLALSMG SYRVVLFHLI THAYSKALLF LGSGSIIHSM EVFVRYSPAK SQNMILMGSL TKHVPITKTS FLVDMLSFCG IPPFACFWSK DEILSDN

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.