Factsheet for Solyc12g033070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	57.48	86.62
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	19.16	58.57
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	23.83	42.5
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	28.04	37.04
CDY19664	Canola	endoplasmic reticulum, plasma membrane	36.92	20.31
VIT_00s0246g00140.t01	Wine grape	plasma membrane	36.92	16.29
KRH28854	Soybean	plasma membrane	14.02	15.23
CDX71645	Canola	plastid	39.25	13.48
ATCG01010.1	Thale cress	plasma membrane	40.19	11.53
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	6.07	10.66
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	5.61	5.69
Solyc03g061580.1.1	Tomato	plastid	1.4	3.41
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	3.74	2.65
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.0	0.0
TraesCS6A01G152800.1	Wheat	vacuole	0.0	0.0
Solyc05g013110.1.1	Tomato	vacuole	0.0	0.0
Solyc03g013620.1.1	Tomato	plasma membrane	0.0	0.0
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	0.0	0.0
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc01g017090.2.1	Tomato	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0042773	GO:GO:0055114	InterPro:IPR036408	UniProt:K4DDX5	InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5_subgr
InterPro:ND/Mrp_mem	PFAM:PF00223	PFAM:PF00361	PFAM:PF01010	PRINTS:PR01435	InterPro:PSI_PsaA/B
InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	EnsemblPlantsGene:Solyc12g033070.1	EnsemblPlants:Solyc12g033070.1.1
TMHMM:TMhelix	UniParc:UPI0002769CFE	:	:	:	:

Description

No Description!

Coordinates

chr12:-:60947916..60948610

Molecular Weight (calculated)

24625.3 Da

IEP (calculated)

10.092

GRAVY (calculated)

0.373

Length

214 amino acids

Sequence
(BLAST)

001: MFLFGHSVWA TIFMFLISLR GYWRELIVTL AWAHEHTPLA NLIRWRDKLV ALSTVQARLV GLDHFSVGYI FTYATFLIAS TSGLKKHVLI TKITFLLGTL
101: FLCVIPPLAC FWSKDEIFND SWLYSLFFAI IAWATTGLTA FYIFRIYLLT FEGHLNAHFQ NYGGKQKIPF YSISLWGKNG VKKNSCLLTM NNNESTYFLS
201: KTKYPVASNG RKMT

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.