Factsheet for VIT_00s0246g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 4
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G152800.1	Wheat	vacuole	32.29	29.25
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	17.71	14.29
ATCG01010.1	Thale cress	plasma membrane	71.88	9.25
CDX71645	Canola	plastid	57.29	8.83
Solyc05g013110.1.1	Tomato	vacuole	2.08	2.33
KRH28854	Soybean	plasma membrane	1.04	0.51
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	1.04	0.47
CDY19664	Canola	endoplasmic reticulum, plasma membrane	1.04	0.26
VIT_00s0246g00140.t01	Wine grape	plasma membrane	1.04	0.21
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	1.04	0.17
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	0.0	0.0
PGSC0003DMT400028453	Potato	mitochondrion	0.0	0.0
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	0.0	0.0
Solyc12g033070.1.1	Tomato	extracellular	0.0	0.0
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	0.0	0.0
HORVU6Hr1G037310.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB55909	ProteinID:CCB55909.1	UniProt:F6HMK4	EMBL:FN595993	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0042773	GO:GO:0048038	GO:GO:0055114	InterPro:NADHpl_OxRdtase_5_subgr	PRINTS:PR01435
PANTHER:PTHR42829	TIGR:TC55787	TMHMM:TMhelix	UniParc:UPI00015CC145	ArrayExpress:VIT_00s0246g00150	EnsemblPlantsGene:VIT_00s0246g00150
EnsemblPlants:VIT_00s0246g00150.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:17194877..17196381

Molecular Weight (calculated)

11175.7 Da

IEP (calculated)

6.506

GRAVY (calculated)

0.453

Length

96 amino acids

Sequence
(BLAST)

1: MEHTYQYAWI IPFLPLPIPM LLGVGLLLFP TATKNLRRMW SFTSVLLLSI DMTFSVNLSI HQINSSSIYQ YVWSWTINND FSLEFGYLID PLTSIK

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.