Factsheet for Solyc05g013100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 3
mitochondrion 2
golgi 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	44.17	32.72
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	30.0	29.51
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	34.17	28.87
Solyc12g033070.1.1	Tomato	extracellular	42.5	23.83
CDY19664	Canola	endoplasmic reticulum, plasma membrane	61.67	19.02
VIT_00s0246g00140.t01	Wine grape	plasma membrane	58.33	14.43
HORVU6Hr1G037310.1	Barley	cytosol	43.33	13.9
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	23.33	13.27
CDX71645	Canola	plastid	61.67	11.88
ATCG01010.1	Thale cress	plasma membrane	62.5	10.05
Solyc03g061580.1.1	Tomato	plastid	5.83	7.95
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	3.33	1.32
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.0	0.0
TraesCS6A01G152800.1	Wheat	vacuole	0.0	0.0
Solyc05g013110.1.1	Tomato	vacuole	0.0	0.0
Solyc03g013620.1.1	Tomato	plasma membrane	0.0	0.0
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	0.0	0.0
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc01g017090.2.1	Tomato	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc05g013100.1.1	EnsemblPlantsGene:Solyc05g013100.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR42829
PANTHER:PTHR42829:SF3	TMHMM:TMhelix	UniParc:UPI0002765CB7	UniProt:K4BY31	MapMan:35.1	:

Description

No Description!

Coordinates

chr5:-:6188291..6188776

Molecular Weight (calculated)

13702.0 Da

IEP (calculated)

9.335

GRAVY (calculated)

0.234

Length

120 amino acids

Sequence
(BLAST)

001: MSQLNYMMLA LGSKKSIIHP MKIIVGYSPA QSQNMGLMGG LRKHVPIIKI TFLLDEIIND TWLYSSIFTV IAWVTAELTA FYMFQIYLHT FEGHLNAHFQ
101: NYGGKHKSLS IPCLYTVKTE

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.