Factsheet for GRMZM5G894515_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

plastid: 18453340
plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50802	Barley	plastid	92.68	92.56
HORVU0Hr1G025220.1	Barley	endoplasmic reticulum, plasma membrane	92.68	92.56
HORVU0Hr1G036330.1	Barley	endoplasmic reticulum, plasma membrane	92.68	92.56
HORVU1Hr1G048170.1	Barley	endoplasmic reticulum, plasma membrane	92.68	92.56
CAA33950	Rice	plasma membrane	90.24	90.74
TraesCS4A01G141100.1	Wheat	plastid	23.85	90.26
HORVU2Hr1G044770.1	Barley	plasma membrane	47.29	84.1
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	7.72	82.61
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	13.01	78.69
Solyc01g017090.2.1	Tomato	plasma membrane	20.33	76.53
Solyc03g013620.1.1	Tomato	plasma membrane	14.77	68.12
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	25.75	62.91
PGSC0003DMT400052919	Potato	plasma membrane	17.75	49.43
GRMZM5G834128_P01	Maize	plasma membrane	25.75	39.34

Protein Annotations

MapMan:1.1.8.1.1.6	EntrezGene:845185	ProteinID:AAA64703.1	ProteinID:CAA60346.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0042773	GO:GO:0048038	GO:GO:0055114	EnsemblPlantsGene:GRMZM5G894515	EnsemblPlants:GRMZM5G894515_P01
EnsemblPlants:GRMZM5G894515_T01	InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	UniProt:P46620
PFAM:PF00361	PFAM:PF00662	PFAM:PF01010	PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829
InterPro:Proton_antipo_N	TIGRFAMs:TIGR01974	TMHMM:TMhelix	UniParc:UPI00001307B7	SEG:seg	:

Description

ndhFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46620]

Coordinates

chrPt:-:105072..107369

Molecular Weight (calculated)

82981.1 Da

IEP (calculated)

9.196

GRAVY (calculated)

0.560

Length

738 amino acids

Sequence
(BLAST)

001: MEHTYQYAWV IPLLPLPVIM SMGFGLFLIP TATKNLRRIW AFPSILLLSI AMVFSLHLSI QQINGSSIYQ YLWSWTINND FSLEFGYLVD PLTSIMLILI
101: TTVGILVLIY SDDYMSHDEG YLRFFVYISF FNTSMLGLVT SSNLIQIYFF WELVGMCSYL LIGFWFTRPI AASACQKAFV TNRVGDFGLL LGILGFFWIT
201: GSLEFRDLFK IANNWIPNNG INSLLTTLCA FLLFLGAVAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLLARL LPLFISLPWI MSFISLIGTI
301: TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA YSKALLFLGS GSVIHSMEPL VGYSPDKSQN MVLMGGLRKY VPITRTTFLC
401: GTLSLCGIPP LACFWSKDEI LSNSWLYSPF FGIIASFTAG LTAFYMFRIY LLTFDGYLRV HFQNYSSTKE GSLYSISLWG KSISKGVNRD FVLSTMKSGV
501: SFFSQNIPKI PANTRNKIGS FSTPFGAKNT FVYPHETGNT MLFPLLILLL FTLFIGSIGI HFDNGVKDNR ILELTILSKW LTPSINLFQE NSNSSINSYE
601: FLTNAISSVS LAIFGLFIAY IFYGSAYSFF QNLNFQNSLV KKNPKKSFLD EVKKKIYSWS YNRGYIDFFY TRVFILGIRK LAELTHFFDK GVIDGITNGV
701: GLAGFCIGEE IKYVGGGRIS SYLFFFLCYV SLFLFFIP

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.