Factsheet for TraesCS4A01G141100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017100.1.1	Tomato	endoplasmic reticulum, vacuole	34.36	54.92
HORVU2Hr1G044770.1	Barley	plasma membrane	60.51	28.43
AGP50802	Barley	plastid	92.31	24.36
HORVU0Hr1G025220.1	Barley	endoplasmic reticulum, plasma membrane	92.31	24.36
HORVU0Hr1G036330.1	Barley	endoplasmic reticulum, plasma membrane	92.31	24.36
HORVU1Hr1G048170.1	Barley	endoplasmic reticulum, plasma membrane	92.31	24.36
CAA33950	Rice	plasma membrane	90.77	24.11
GRMZM5G894515_P01	Maize	plastid	90.26	23.85
TraesCS3A01G181300.1	Wheat	golgi	41.54	23.14
PGSC0003DMT400052919	Potato	plasma membrane	11.79	8.68
Solyc04g024570.1.1	Tomato	endoplasmic reticulum	8.72	5.63
Solyc01g017090.2.1	Tomato	plasma membrane	0.0	0.0
Solyc02g032320.1.1	Tomato	extracellular, golgi, vacuole	0.0	0.0
Solyc03g013620.1.1	Tomato	plasma membrane	0.0	0.0
TraesCS6A01G152800.1	Wheat	vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS4A01G141100.1	EnsemblPlantsGene:TraesCS4A01G141100	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042773	GO:GO:0055114
InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PANTHER:PTHR42829	PANTHER:PTHR42829:SF3	PFAM:PF00361	PRINTS:PR01434
PRINTS:PR01435	SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4A:-:219291177..219291764

Molecular Weight (calculated)

21435.1 Da

IEP (calculated)

9.705

GRAVY (calculated)

0.879

Length

195 amino acids

Sequence
(BLAST)

001: MVIRTISALI HATTMVVAGI FLLARLLPLF ISLPLIMSSI SLVGTITLCL VATLALAQRD IKRSLAYSTM SQLGYMMLAL GIGSYQAALF HLITHAYSKA
101: LLFLGYGSVI HSMEPLVGYS PDKSQNMVLM GSLRKYIPIT RTTFLWGTLS LCGIPPLACF WSKYEILSNS WLYSPLFGII ASFTAGLTAF YMFQI

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.