Factsheet for HORVU1Hr1G048170.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
plastid 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50802	Barley	plastid	100.0	100.0
HORVU0Hr1G025220.1	Barley	endoplasmic reticulum, plasma membrane	100.0	100.0
HORVU0Hr1G036330.1	Barley	endoplasmic reticulum, plasma membrane	100.0	100.0
HORVU6Hr1G037310.1	Barley	cytosol	49.53	97.86
HORVU2Hr1G044770.1	Barley	plasma membrane	52.23	93.01
GRMZM5G894515_P01	Maize	plastid	92.56	92.68
TraesCS4A01G141100.1	Wheat	plastid	24.36	92.31
CAA33950	Rice	plasma membrane	91.47	92.1
HORVU5Hr1G005440.1	Barley	plasma membrane	45.2	90.76
HORVU2Hr1G044830.1	Barley	endoplasmic reticulum	6.63	51.58
HORVU5Hr1G072300.1	Barley	vacuole	20.7	48.88
HORVU3Hr1G004710.1	Barley	plasma membrane	24.9	46.12
HORVU0Hr1G034160.1	Barley	vacuole	24.76	45.86
HORVU4Hr1G024000.1	Barley	plasma membrane	24.49	45.36
HORVU4Hr1G023920.1	Barley	plasma membrane	24.22	44.86
HORVU3Hr1G045020.1	Barley	endoplasmic reticulum	10.42	43.75

Protein Annotations

MapMan:1.1.8.1.1.6	EntrezGene:4525163	ProteinID:AGP50802.1	ProteinID:AMA20293.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0042773	GO:GO:0048038	GO:GO:0055114	EnsemblPlantsGene:HORVU1Hr1G048170	EnsemblPlants:HORVU1Hr1G048170.1
InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PFAM:PF00361	PFAM:PF00662
PFAM:PF01010	PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829	InterPro:Proton_antipo_N	UniProt:S4Z0K2
TIGRFAMs:TIGR01974	TMHMM:TMhelix	UniParc:UPI0000E8A8A2	RefSeq:YP_874699.1	SEG:seg	:

Description

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/TrEMBL;Acc:S4Z0K2]

Coordinates

chrchr1H:+:355739788..355742007

Molecular Weight (calculated)

82868.7 Da

IEP (calculated)

9.005

GRAVY (calculated)

0.565

Length

739 amino acids

Sequence
(BLAST)

001: MEHTYQYAWV IPLLPLPVIM SMGFGLILIP TATKNLRRIW AFPSVLLLSI AMVFSVQLSI QQINGSSIYQ YLWSWTVNND FSLEFGYLID PLTSIMLILI
101: TTVGILVLIY SDGYMSHDEG YLRFFVYISF FNTSMLGLVT SSNLIQIYFF WELVGMCSYL LIGFWFTRPI AASACQKAFV TNRVGDFGLL LGILGFFWIT
201: GSLEFRDLFQ IANNWIPNNG INSLLTTLCA FLLFLGAVAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLLARL LPLFISLPLI MSFISLVGTI
301: TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA YSKALLFLGS GSVIHSMEPL VGYSPDKSQN MVLMGGLRKY IPITRTTFLW
401: GTLSLCGIPP LACFWSKDEI LSNSWLYSPF FGIIASFTAG LTAFYMFRIY LLTFGGYLRV HFQNYSSTKE SSLYSISLWG KRIPKGVNRD FVLSTTKSGV
501: SFFSQNIPKI QGNTRNRIGS FTTSFGAKNT FAYPHETGNT MLFPLLILLL FTLFIGFIGI SFDNGGMDNG IAELTILSKW LTPSKNFTQE SSNSFVNSYE
601: FITNAISSVT LAIFGLFIAY IFYGSAYSFF QNLDLINSFV KRNPKKEFLD QVKKNIYSWS YNRGYIDIFY TRVFTLGIRG LTELTEFFDK GVIDGITNGV
701: GLASFCIGEE IKYVGGGRIS SYLFFFLCYV SVFLFFFLS

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.