CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20678	Soybean	endoplasmic reticulum	53.33	61.07
KRH13331	Soybean	mitochondrion	51.33	58.78
Zm00001d027389_P001	Maize	plastid	33.33	58.14
PGSC0003DMT400065693	Potato	cytosol, plastid	27.33	55.41
CDY50560	Canola	cytosol, mitochondrion	30.67	53.49
TraesCS2B01G172200.1	Wheat	cytosol	36.0	41.54
HORVU2Hr1G026060.1	Barley	cytosol	36.0	41.54
Bra038706.1-P	Field mustard	mitochondrion	36.67	41.35
Bra001444.1-P	Field mustard	mitochondrion	36.0	40.6
CDY52615	Canola	mitochondrion	36.0	40.6
CDY00763	Canola	mitochondrion	36.0	40.6
CDX73829	Canola	mitochondrion	36.0	40.6
AT3G12260.1	Thale cress	mitochondrion	36.0	40.6
EES03003	Sorghum	cytosol	35.33	40.15
GSMUA_Achr3P09280_001	Banana	mitochondrion	35.33	39.55
CDY42139	Canola	mitochondrion	37.33	39.44
CDY08442	Canola	mitochondrion	37.33	39.44
Bra034766.1-P	Field mustard	mitochondrion	37.33	39.44
PGSC0003DMT400010919	Potato	mitochondrion	34.0	38.64
TraesCS2A01G146900.1	Wheat	cytosol	36.0	38.3
VIT_13s0084g00610.t01	Wine grape	cytosol	33.33	37.59
Solyc01g022750.2.1	Tomato	plastid	32.67	37.12
PGSC0003DMT400013502	Potato	cytosol	19.33	30.85
CDY50561	Canola	extracellular	8.0	15.58

Protein Annotations

EMBL:ACUP02005516	EnsemblPlants:KRH37810	EnsemblPlantsGene:GLYMA_09G091000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	PANTHER:PTHR12964	ProteinID:KRH37810	ProteinID:KRH37810.1	UniParc:UPI00023CAAF5
UniProt:I1L280	MapMan:2.4.1.4.1.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:12223222..12225850

Molecular Weight (calculated)

17063.2 Da

IEP (calculated)

7.921

GRAVY (calculated)

-0.287

Length

150 amino acids

Sequence
(BLAST)

001: MANAALRNVK VLPNSANMEE ARHRVFEFFR TACRLLPSVM EIYNLYDVVS VSELRSSVAS QIRNNIHVTD PKVFCDRYAA FQGDGRAEEC CGPFKAEASY
101: HWSVRSWSAS AGFSHKRPGH LYFSEEFLQH QLLLKFGHEL CSVSSNKELS

Best Arabidopsis Sequence Match ( AT3G12260.1 )
(BLAST)

001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.