CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027389_P001	Maize	plastid	55.3	84.88
HORVU2Hr1G026060.1	Barley	cytosol	80.3	81.54
TraesCS2B01G172200.1	Wheat	cytosol	79.55	80.77
TraesCS2A01G146900.1	Wheat	cytosol	79.55	74.47
CDX73829	Canola	mitochondrion	72.73	72.18
Bra038706.1-P	Field mustard	mitochondrion	71.97	71.43
Bra001444.1-P	Field mustard	mitochondrion	71.97	71.43
CDY52615	Canola	mitochondrion	71.97	71.43
CDY00763	Canola	mitochondrion	71.97	71.43
PGSC0003DMT400013502	Potato	cytosol	49.24	69.15
Solyc01g022750.2.1	Tomato	plastid	68.94	68.94
VIT_13s0084g00610.t01	Wine grape	cytosol	68.94	68.42
PGSC0003DMT400010919	Potato	mitochondrion	68.18	68.18
AT3G12260.1	Thale cress	mitochondrion	68.18	67.67
PGSC0003DMT400065693	Potato	cytosol, plastid	37.88	67.57
CDY42139	Canola	mitochondrion	71.97	66.9
GSMUA_Achr3P09280_001	Banana	mitochondrion	67.42	66.42
KRH13331	Soybean	mitochondrion	65.91	66.41
CDY08442	Canola	mitochondrion	71.21	66.2
Bra034766.1-P	Field mustard	mitochondrion	71.21	66.2
CDY50561	Canola	extracellular	37.88	64.94
KRH20678	Soybean	endoplasmic reticulum	63.64	64.12
CDY50560	Canola	cytosol, mitochondrion	37.88	58.14
KRH37810	Soybean	cytosol, plastid	40.15	35.33

Protein Annotations

EnsemblPlants:EES03003	EnsemblPlantsGene:SORBI_3003G170300	EntrezGene:8069571	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0016020	PANTHER:PTHR12964	ProteinID:EES03003
ProteinID:EES03003.1	RefSeq:XP_002457883.1	unigene:Sbi.6925	UniParc:UPI0001A84B77	UniProt:C5XLB7	MapMan:2.4.1.4.1.3

Description

hypothetical protein

Coordinates

chr3:-:30527128..30534637

Molecular Weight (calculated)

15159.2 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.403

Length

132 amino acids

Sequence
(BLAST)

001: MAFTMRAVKV PPNSASLEEA RHRVFDFFKQ ACRSIPTVME IYNLDDVVTP SQLRSTIAKE IRKNQNVTNP KVIDMLLFNG MEELNNIVEH AKQRHHVIGQ
101: YVIGQEGLVH DLGSKDQGNS DFLKKFYTSN YF

Best Arabidopsis Sequence Match ( AT3G12260.1 )
(BLAST)

001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.