CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13331	Soybean	mitochondrion	95.42	95.42
PGSC0003DMT400013502	Potato	cytosol	48.09	67.02
Bra038706.1-P	Field mustard	mitochondrion	67.18	66.17
Bra001444.1-P	Field mustard	mitochondrion	66.41	65.41
VIT_13s0084g00610.t01	Wine grape	cytosol	66.41	65.41
CDX73829	Canola	mitochondrion	66.41	65.41
CDY00763	Canola	mitochondrion	66.41	65.41
CDY52615	Canola	mitochondrion	66.41	65.41
PGSC0003DMT400010919	Potato	mitochondrion	65.65	65.15
TraesCS2B01G172200.1	Wheat	cytosol	64.12	64.62
HORVU2Hr1G026060.1	Barley	cytosol	64.12	64.62
GSMUA_Achr3P09280_001	Banana	mitochondrion	65.65	64.18
AT3G12260.1	Thale cress	mitochondrion	64.89	63.91
EES03003	Sorghum	cytosol	64.12	63.64
Solyc01g022750.2.1	Tomato	plastid	64.12	63.64
CDY42139	Canola	mitochondrion	67.94	62.68
CDY08442	Canola	mitochondrion	67.18	61.97
Bra034766.1-P	Field mustard	mitochondrion	67.18	61.97
TraesCS2A01G146900.1	Wheat	cytosol	64.12	59.57
PGSC0003DMT400065693	Potato	cytosol, plastid	32.82	58.11
CDY50561	Canola	extracellular	33.59	57.14
Zm00001d027389_P001	Maize	plastid	36.64	55.81
CDY50560	Canola	cytosol, mitochondrion	35.88	54.65
KRH37810	Soybean	cytosol, plastid	61.07	53.33

Protein Annotations

EMBL:ACUP02008290	EnsemblPlants:KRH20678	EnsemblPlantsGene:GLYMA_13G193600	EntrezGene:100814371	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	PANTHER:PTHR12964	ProteinID:KRH20678	ProteinID:KRH20678.1
UniParc:UPI000233BAC6	UniProt:I1M0N9	MapMan:2.4.1.4.1.3	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:30677250..30679942

Molecular Weight (calculated)

15095.0 Da

IEP (calculated)

9.031

GRAVY (calculated)

-0.349

Length

131 amino acids

Sequence
(BLAST)

001: MANAALRNVK VLPNSANMEE ARHRVFEFFR TACRSLPSVM EIYNLYDVVS VSELRSSVAS QIRNNIHVTD PKVIDMLLFK GMEELKNVVD HSKQRHHIIG
101: QYVVGRQVQD SATKDPDTST FLKNFYNTNY F

Best Arabidopsis Sequence Match ( AT3G12260.1 )
(BLAST)

001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.