Factsheet for Solyc01g022750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013502	Potato	cytosol	67.42	94.68
PGSC0003DMT400065693	Potato	cytosol, plastid	51.52	91.89
EES03003	Sorghum	cytosol	68.94	68.94
VIT_13s0084g00610.t01	Wine grape	cytosol	66.67	66.17
GSMUA_Achr3P09280_001	Banana	mitochondrion	65.91	64.93
KRH20678	Soybean	endoplasmic reticulum	63.64	64.12
TraesCS2B01G172200.1	Wheat	cytosol	62.88	63.85
HORVU2Hr1G026060.1	Barley	cytosol	62.88	63.85
Zm00001d027389_P001	Maize	plastid	40.91	62.79
KRH13331	Soybean	mitochondrion	62.12	62.6
CDY52615	Canola	mitochondrion	62.88	62.41
CDY00763	Canola	mitochondrion	62.88	62.41
Bra001444.1-P	Field mustard	mitochondrion	62.88	62.41
CDX73829	Canola	mitochondrion	62.12	61.65
Bra038706.1-P	Field mustard	mitochondrion	62.12	61.65
AT3G12260.1	Thale cress	mitochondrion	62.12	61.65
TraesCS2A01G146900.1	Wheat	cytosol	62.88	58.87
CDY42139	Canola	mitochondrion	62.88	58.45
CDY08442	Canola	mitochondrion	62.88	58.45
Bra034766.1-P	Field mustard	mitochondrion	62.88	58.45
CDY50561	Canola	extracellular	33.33	57.14
CDY50560	Canola	cytosol, mitochondrion	33.33	51.16
KRH37810	Soybean	cytosol, plastid	37.12	32.67

Protein Annotations

EnsemblPlants:Solyc01g022750.2.1	EnsemblPlantsGene:Solyc01g022750.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	PANTHER:PTHR12964	UniParc:UPI0002762F4B	UniProt:K4AV57	MapMan:2.4.1.4.1.3	:

Description

No Description!

Coordinates

chr1:-:32937521..32944195

Molecular Weight (calculated)

15089.3 Da

IEP (calculated)

10.014

GRAVY (calculated)

-0.362

Length

132 amino acids

Sequence
(BLAST)

001: MSQILKRLKV PPNSASLEEA RTRTFEFFRM CCRSIPHVME IYNLHDVVTP SQLRSAAAAE VRKNANITNP KVIDMLLFKG MEELMNIVNQ SKQRHHIVGQ
101: YVVGNQGLVQ DVSAKDRDAS NFLKKFYSSN YS

Best Arabidopsis Sequence Match ( AT3G12260.1 )
(BLAST)

001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.