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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • cytosol 3
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
 mitochondrion: 27780359
mitochondrion: 28499913
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH20678 Soybean endoplasmic reticulum 95.42 95.42
TraesCS2B01G172200.1 Wheat cytosol 67.18 67.69
HORVU2Hr1G026060.1 Barley cytosol 67.18 67.69
Bra038706.1-P Field mustard mitochondrion 68.7 67.67
Bra001444.1-P Field mustard mitochondrion 67.94 66.92
CDX73829 Canola mitochondrion 67.94 66.92
CDY00763 Canola mitochondrion 67.94 66.92
CDY52615 Canola mitochondrion 67.94 66.92
VIT_13s0084g00610.t01 Wine grape cytosol 67.18 66.17
PGSC0003DMT400013502 Potato cytosol 47.33 65.96
PGSC0003DMT400010919 Potato mitochondrion 66.41 65.91
EES03003 Sorghum cytosol 66.41 65.91
GSMUA_Achr3P09280_001 Banana mitochondrion 67.18 65.67
AT3G12260.1 Thale cress mitochondrion 66.41 65.41
CDY42139 Canola mitochondrion 69.47 64.08
CDY08442 Canola mitochondrion 68.7 63.38
Bra034766.1-P Field mustard mitochondrion 68.7 63.38
TraesCS2A01G146900.1 Wheat cytosol 67.18 62.41
Solyc01g022750.2.1 Tomato plastid 62.6 62.12
CDY50561 Canola extracellular 35.11 59.74
PGSC0003DMT400065693 Potato cytosol, plastid 32.06 56.76
CDY50560 Canola cytosol, mitochondrion 35.88 54.65
Zm00001d027389_P001 Maize plastid 35.88 54.65
KRH37810 Soybean cytosol, plastid 58.78 51.33
Protein Annotations
EMBL:ACUP02009695EMBL:BT090128EnsemblPlants:KRH13331EnsemblPlantsGene:GLYMA_15G231900EntrezGene:100499925GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739PANTHER:PTHR12964ProteinID:KRH13331
ProteinID:KRH13331.1SEG:segUniParc:UPI0001B1569CUniProt:C6SY81MapMan:2.4.1.4.1.3:
Description
hypothetical protein
Coordinates
chr15:+:43600804..43603943
Molecular Weight (calculated)
15069.1 Da
IEP (calculated)
9.728
GRAVY (calculated)
-0.355
Length
131 amino acids
Sequence
(BLAST)
001: MANAALRNVK VLPNSANMEE ARHRVFQFFR TACRSLPSVM EIYNLYDVVS VSELRSSVSS QIRKNIHVTD PKVIDMLLFK GMEELKNVVD HSKQRHHIIG
101: QYVVGQQVQD SATKDQGTST FLKNFYNTNY F
Best Arabidopsis Sequence Match ( AT3G12260.1 )
(BLAST)
001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.