Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00763 | Canola | mitochondrion | 79.22 | 45.86 |
| CDY52615 | Canola | mitochondrion | 79.22 | 45.86 |
| CDX73829 | Canola | mitochondrion | 79.22 | 45.86 |
| PGSC0003DMT400013502 | Potato | cytosol | 53.25 | 43.62 |
| CDY42139 | Canola | mitochondrion | 79.22 | 42.96 |
| CDY08442 | Canola | mitochondrion | 77.92 | 42.25 |
| EES03003 | Sorghum | cytosol | 64.94 | 37.88 |
| TraesCS2B01G172200.1 | Wheat | cytosol | 63.64 | 37.69 |
| HORVU2Hr1G026060.1 | Barley | cytosol | 63.64 | 37.69 |
| PGSC0003DMT400010919 | Potato | mitochondrion | 62.34 | 36.36 |
| KRH13331 | Soybean | mitochondrion | 59.74 | 35.11 |
| TraesCS2A01G146900.1 | Wheat | cytosol | 63.64 | 34.75 |
| VIT_13s0084g00610.t01 | Wine grape | cytosol | 59.74 | 34.59 |
| KRH20678 | Soybean | endoplasmic reticulum | 57.14 | 33.59 |
| GSMUA_Achr3P09280_001 | Banana | mitochondrion | 58.44 | 33.58 |
| Solyc01g022750.2.1 | Tomato | plastid | 57.14 | 33.33 |
| Zm00001d027389_P001 | Maize | plastid | 9.09 | 8.14 |
| KRH37810 | Soybean | cytosol, plastid | 15.58 | 8.0 |
| CDY50560 | Canola | cytosol, mitochondrion | 7.79 | 6.98 |
| PGSC0003DMT400065693 | Potato | cytosol, plastid | 6.49 | 6.76 |
Protein Annotations
| EnsemblPlants:CDY50561 | EnsemblPlantsGene:GSBRNA2T00096991001 | ProteinID:CDY50561 | ProteinID:CDY50561.1 | UniParc:UPI0004EE20CF | UniProt:A0A078IKP6 |
| MapMan:2.4.1.4.1.3 | : | : | : | : | : |
Description
BnaA01g30750DBnaA01g30750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKP6]
Coordinates
chrLK032922:+:55774..56494
Molecular Weight (calculated)
8821.7 Da
IEP (calculated)
5.529
GRAVY (calculated)
-0.083
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MKCCVDWLLE PAMTIINVID LLLFKGMEEL TDIVDHAKQR HHIIGQYVVG EGLVQNTGSK DQGKSDFLKN FYTSNYF
001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.