CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00763	Canola	mitochondrion	88.37	57.14
CDY52615	Canola	mitochondrion	88.37	57.14
PGSC0003DMT400065693	Potato	cytosol, plastid	48.84	56.76
CDX73829	Canola	mitochondrion	87.21	56.39
Bra038706.1-P	Field mustard	mitochondrion	87.21	56.39
Zm00001d027389_P001	Maize	plastid	54.65	54.65
CDY08442	Canola	mitochondrion	87.21	52.82
CDY42139	Canola	mitochondrion	86.05	52.11
HORVU2Hr1G026060.1	Barley	cytosol	58.14	38.46
TraesCS2B01G172200.1	Wheat	cytosol	58.14	38.46
EES03003	Sorghum	cytosol	58.14	37.88
KRH13331	Soybean	mitochondrion	54.65	35.88
KRH20678	Soybean	endoplasmic reticulum	54.65	35.88
TraesCS2A01G146900.1	Wheat	cytosol	58.14	35.46
GSMUA_Achr3P09280_001	Banana	mitochondrion	53.49	34.33
VIT_13s0084g00610.t01	Wine grape	cytosol	52.33	33.83
Solyc01g022750.2.1	Tomato	plastid	51.16	33.33
PGSC0003DMT400010919	Potato	mitochondrion	50.0	32.58
KRH37810	Soybean	cytosol, plastid	53.49	30.67
PGSC0003DMT400013502	Potato	cytosol	26.74	24.47
CDY50561	Canola	extracellular	6.98	7.79

Protein Annotations

EnsemblPlants:CDY50560	EnsemblPlantsGene:GSBRNA2T00096990001	PANTHER:PTHR12964	ProteinID:CDY50560	ProteinID:CDY50560.1	SEG:seg
UniParc:UPI0004EE8992	UniProt:A0A078IHV1	MapMan:2.4.1.4.1.3	:	:	:

Description

BnaA01g30740DBnaA01g30740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHV1]

Coordinates

chrLK032922:+:55230..55623

Molecular Weight (calculated)

9751.8 Da

IEP (calculated)

8.769

GRAVY (calculated)

0.056

Length

86 amino acids

Sequence
(BLAST)

1: MAAPFTLRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRFAIS AQIRNNAHVT DPKEIDFAFY CTVDFV

Best Arabidopsis Sequence Match ( AT3G12260.1 )
(BLAST)

001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.