Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G172200.1 | Wheat | cytosol | 90.78 | 98.46 |
| HORVU2Hr1G026060.1 | Barley | cytosol | 90.78 | 98.46 |
| EES03003 | Sorghum | cytosol | 74.47 | 79.55 |
| Bra038706.1-P | Field mustard | mitochondrion | 65.96 | 69.92 |
| Bra001444.1-P | Field mustard | mitochondrion | 65.25 | 69.17 |
| CDX73829 | Canola | mitochondrion | 65.25 | 69.17 |
| CDY00763 | Canola | mitochondrion | 65.25 | 69.17 |
| CDY52615 | Canola | mitochondrion | 65.25 | 69.17 |
| Zm00001d027389_P001 | Maize | plastid | 41.13 | 67.44 |
| KRH13331 | Soybean | mitochondrion | 62.41 | 67.18 |
| AT3G12260.1 | Thale cress | mitochondrion | 62.41 | 66.17 |
| CDY42139 | Canola | mitochondrion | 65.96 | 65.49 |
| CDY08442 | Canola | mitochondrion | 65.96 | 65.49 |
| Bra034766.1-P | Field mustard | mitochondrion | 65.25 | 64.79 |
| KRH20678 | Soybean | endoplasmic reticulum | 59.57 | 64.12 |
| PGSC0003DMT400013502 | Potato | cytosol | 42.55 | 63.83 |
| CDY50561 | Canola | extracellular | 34.75 | 63.64 |
| PGSC0003DMT400010919 | Potato | mitochondrion | 59.57 | 63.64 |
| Solyc01g022750.2.1 | Tomato | plastid | 58.87 | 62.88 |
| GSMUA_Achr3P09280_001 | Banana | mitochondrion | 59.57 | 62.69 |
| VIT_13s0084g00610.t01 | Wine grape | cytosol | 57.45 | 60.9 |
| CDY50560 | Canola | cytosol, mitochondrion | 35.46 | 58.14 |
| PGSC0003DMT400065693 | Potato | cytosol, plastid | 28.37 | 54.05 |
| KRH37810 | Soybean | cytosol, plastid | 38.3 | 36.0 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G146900.1 | EnsemblPlantsGene:TraesCS2A01G146900 | PANTHER:PTHR12964 | MapMan:2.4.1.4.1.3 | : | : |
Description
No Description!
Coordinates
chr2A:-:92488389..92491758
Molecular Weight (calculated)
16100.4 Da
IEP (calculated)
8.486
GRAVY (calculated)
-0.219
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFTMRAVKV PPNSASMAEA RHRVFDFFRD ACRAIPSIME IYNLDDVVTP AQLRASISQQ IRKNQGVSDP KFVVIFNIHL SSVIDMLLFN GMEELNNITE
101: HAKQRHHIIG QYVVGHKGLV QDLEKDQGSS EFLKKFYTSN Y
101: HAKQRHHIIG QYVVGHKGLV QDLEKDQGSS EFLKKFYTSN Y
001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.