Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g022750.2.1 | Tomato | plastid | 94.68 | 67.42 |
| PGSC0003DMT400010919 | Potato | mitochondrion | 79.79 | 56.82 |
| CDY50561 | Canola | extracellular | 43.62 | 53.25 |
| EES03003 | Sorghum | cytosol | 69.15 | 49.24 |
| KRH20678 | Soybean | endoplasmic reticulum | 67.02 | 48.09 |
| KRH13331 | Soybean | mitochondrion | 65.96 | 47.33 |
| TraesCS2B01G172200.1 | Wheat | cytosol | 63.83 | 46.15 |
| HORVU2Hr1G026060.1 | Barley | cytosol | 63.83 | 46.15 |
| PGSC0003DMT400065693 | Potato | cytosol, plastid | 36.17 | 45.95 |
| Bra001444.1-P | Field mustard | mitochondrion | 64.89 | 45.86 |
| VIT_13s0084g00610.t01 | Wine grape | cytosol | 64.89 | 45.86 |
| CDY00763 | Canola | mitochondrion | 64.89 | 45.86 |
| CDY52615 | Canola | mitochondrion | 64.89 | 45.86 |
| Bra038706.1-P | Field mustard | mitochondrion | 63.83 | 45.11 |
| CDX73829 | Canola | mitochondrion | 63.83 | 45.11 |
| GSMUA_Achr3P09280_001 | Banana | mitochondrion | 62.77 | 44.03 |
| AT3G12260.1 | Thale cress | mitochondrion | 61.7 | 43.61 |
| CDY42139 | Canola | mitochondrion | 64.89 | 42.96 |
| CDY08442 | Canola | mitochondrion | 64.89 | 42.96 |
| Bra034766.1-P | Field mustard | mitochondrion | 64.89 | 42.96 |
| TraesCS2A01G146900.1 | Wheat | cytosol | 63.83 | 42.55 |
| Zm00001d027389_P001 | Maize | plastid | 30.85 | 33.72 |
| CDY50560 | Canola | cytosol, mitochondrion | 24.47 | 26.74 |
| KRH37810 | Soybean | cytosol, plastid | 30.85 | 19.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400013502 | EnsemblPlantsGene:PGSC0003DMG400005271 | PANTHER:PTHR12964 | PGSC:PGSC0003DMG400005271 | UniParc:UPI000295D1AA | UniProt:M1A2Y2 |
| MapMan:2.4.1.4.1.3 | : | : | : | : | : |
Description
NADH dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400005271]
Coordinates
chr5:+:42416020..42416679
Molecular Weight (calculated)
10639.7 Da
IEP (calculated)
9.822
GRAVY (calculated)
-0.464
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MEVYNLHDVV SPSQLRSAAA AEVRKNANVT NPKVIDMLLF KGMEELMNIV NQSKQRHHIV GQYVVGNQGL VQDVSGKDRD ASNFLKKFYS RNYS
001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.