Factsheet for Bra018100.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000873.1-P
Bra001351.1-P
Bra003109.1-P
Bra003627.1-P
Bra004437.1-P
Bra004680.1-P
Bra005998.1-P
Bra006117.1-P
Bra008938.1-P
Bra009347.1-P
Bra012716.1-P
Bra014069.1-P
Bra017426.1-P
Bra018042.1-P
Bra018237.1-P
Bra020934.1-P
Bra021373.1-P
Bra022613.1-P
Bra023341.1-P
Bra024437.1-P
Bra024837.1-P
Bra026619.1-P
Bra029106.1-P
Bra029702.1-P
Bra032017.1-P
Bra032216.1-P
Bra034766.1-P
Bra035083.1-P
Bra036681.1-P
Bra037836.1-P
Bra038466.1-P
Bra040051.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	Bra014069.1-P	AT1G47260.1	12837548
AT3G47930.1	Bra032216.1-P	AT1G47260.1	12837548
AT3G47930.1	Bra003627.1-P	AT1G79010.1	12837548
AT3G47930.1	Bra035083.1-P	AT1G79010.1	12837548
AT3G47930.1	Bra017426.1-P	AT2G02050.1	12837548
AT3G47930.1	Bra024837.1-P	AT2G02050.1	12837548
AT3G47930.1	Bra026619.1-P	AT2G02050.1	12837548
AT3G47930.1	Bra036681.1-P	AT2G20360.1	12837548
AT3G47930.1	Bra018237.1-P	AT2G31490.1	12837548
AT3G47930.1	Bra004680.1-P	AT2G42310.1	12837548
AT3G47930.1	Bra004437.1-P	AT2G47690.1	12837548
AT3G47930.1	Bra021373.1-P	AT3G03100.1	12837548
AT3G47930.1	Bra032017.1-P	AT3G03100.1	12837548
AT3G47930.1	Bra001351.1-P	AT3G08610.1	12837548
AT3G47930.1	Bra029702.1-P	AT3G08610.1	12837548
AT3G47930.1	Bra040051.1-P	AT3G08610.1	12837548
AT3G47930.1	Bra034766.1-P	AT3G12260.1	12837548
AT3G47930.1	Bra018042.1-P	AT3G48680.1	12837548
AT3G47930.1	Bra000873.1-P	AT4G02580.1	12837548
AT3G47930.1	Bra012716.1-P	AT4G16450.1	12837548
AT3G47930.1	Bra038466.1-P	AT4G16450.1	12837548
AT3G47930.1	Bra020934.1-P	AT4G20150.1	12837548
AT3G47930.1	Bra005998.1-P	AT5G08530.1	12837548
AT3G47930.1	Bra009347.1-P	AT5G08530.1	12837548
AT3G47930.1	Bra006117.1-P	AT5G11770.1	12837548
AT3G47930.1	Bra008938.1-P	AT5G11770.1	12837548
AT3G47930.1	Bra023341.1-P	AT5G11770.1	12837548
AT3G47930.1	Bra003109.1-P	AT5G52840.1	12837548
AT3G47930.1	Bra022613.1-P	AT5G52840.1	12837548
AT3G47930.1	Bra029106.1-P	AT5G52840.1	12837548
AT3G47930.1	Bra024437.1-P	AT5G67590.1	12837548
AT3G47930.1	Bra037836.1-P	AT5G67590.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36916	Canola	mitochondrion	99.67	99.67
AT3G47930.1	Thale cress	mitochondrion	87.35	86.07
KRH71746	Soybean	mitochondrion	74.88	77.05
VIT_08s0007g05710.t01	Wine grape	mitochondrion	76.71	75.7
Solyc10g079470.2.1	Tomato	nucleus	72.55	74.15
PGSC0003DMT400020997	Potato	mitochondrion	72.38	73.85
TraesCS5B01G132600.1	Wheat	plastid	68.55	70.55
TraesCS5D01G140400.2	Wheat	mitochondrion	68.55	70.55
KRH33172	Soybean	mitochondrion	67.89	69.98
HORVU5Hr1G043060.2	Barley	mitochondrion	67.72	69.69
KXG27706	Sorghum	mitochondrion	67.55	69.4
Os11t0143500-01	Rice	mitochondrion	66.89	68.95
Os12t0139600-01	Rice	mitochondrion	66.89	68.95
TraesCS5A01G132300.2	Wheat	mitochondrion	67.55	65.91
GSMUA_Achr6P21390_001	Banana	cytosol	45.59	62.41
Zm00001d004956_P001	Maize	mitochondrion	68.05	45.24

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	Gene3D:3.30.43.10	Gene3D:3.30.465.10	InterPro:ALO	EnsemblPlantsGene:Bra018100
EnsemblPlants:Bra018100.1	EnsemblPlants:Bra018100.1-P	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	InterPro:FAD_lactone_oxidase
InterPro:GL_DH	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003885	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0016020	GO:GO:0016491	GO:GO:0016614	GO:GO:0016633
GO:GO:0016899	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	GO:GO:0080049	InterPro:IPR016166
InterPro:IPR016167	UniProt:M4DNL3	InterPro:Oxid_FAD_bind_N	PFAM:PF01565	PFAM:PF04030	PIRSF:PIRSF000136
PFscan:PS51387	PANTHER:PTHR43762	PANTHER:PTHR43762:SF1	SUPFAM:SSF56176	TIGRFAMs:TIGR01676	UniParc:UPI000253F387
SEG:seg	:	:	:	:	:

Description

AT3G47930 (E=2e-308) ATGLDH | ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE); L-gulono-1,4-lactone dehydrogenase/ galactonolactone dehydrogenase

Coordinates

chrA06:-:10238570..10241182

Molecular Weight (calculated)

67930.3 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.535

Length

601 amino acids

Sequence
(BLAST)

001: MLRSLLLRRS SNARSLRTPT SPFPPLRTLC TSGQTLTPPP PPPPPPISSS ASEKEFRKYA GYAALALFSG AATYFSFPFP ENAKHKKAQI FRYAPLPEDL
101: HTVSNWSGTH EVQTRNFNQP ETLADLEALV KEAHEKKNRI RPVGSGLSPN GIGLSRSGMV NLALMDKVLE VDKEKKRVRV QAGIRVQQLV DAIQEYGLTL
201: QNFASIREQQ IGGIIQVGAH GTGARLPPID EQVIGMKLVT PAKGTIQLSK DKDPELFHLA RCGLGGLGVV AEVTLQCVER QELLEHTYVS TLEEIKKNHK
301: KLLSTNKHVK YLYIPYTDTV VVVTCNPVSK WSGAPKDKPK YTTDEALKHV RDLYRESIVK YRVQDSSKKT PDSREPDINE LSFTELRDKL IALDPLNDVH
401: VGKVNQAEAE FWKKSEGYRV GWSDEILGFD CGGQQWVSET CFPAGTLAKP SMKDLEYIEQ LKELIEKEAI PAPSPIEQRW TGRSKSPMSP AFSTAEDDIF
501: SWVGIIMYLP TADPRQRKDI TDEFFHYRHL TQAKLWDQYS AYEHWAKIEI PKDKEELEAL QERLRKRFPV DAYNKARREL DPNRILSNNM VEKLFPVSKT
601: A

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.