Factsheet for PGSC0003DMT400020997

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001528
PGSC0003DMT400001914
PGSC0003DMT400002438
PGSC0003DMT400003262
PGSC0003DMT400010919
PGSC0003DMT400013502
PGSC0003DMT400029312
PGSC0003DMT400032969
PGSC0003DMT400039315
PGSC0003DMT400049678
PGSC0003DMT400053837
PGSC0003DMT400055230
PGSC0003DMT400057110
PGSC0003DMT400065693
PGSC0003DMT400071247
PGSC0003DMT400073819
PGSC0003DMT400074367
PGSC0003DMT400074648
PGSC0003DMT400074912
PGSC0003DMT400084285

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	PGSC0003DMT400001914	AT1G79010.1	12837548
AT3G47930.1	PGSC0003DMT400084285	AT1G79010.1	12837548
AT3G47930.1	PGSC0003DMT400032969	AT2G42310.1	12837548
AT3G47930.1	PGSC0003DMT400073819	AT2G47690.1	12837548
AT3G47930.1	PGSC0003DMT400001528	AT3G03100.1	12837548
AT3G47930.1	PGSC0003DMT400071247	AT3G08610.1	12837548
AT3G47930.1	PGSC0003DMT400010919	AT3G12260.1	12837548
AT3G47930.1	PGSC0003DMT400013502	AT3G12260.1	12837548
AT3G47930.1	PGSC0003DMT400065693	AT3G12260.1	12837548
AT3G47930.1	PGSC0003DMT400039315	AT3G48680.1	12837548
AT3G47930.1	PGSC0003DMT400032969	AT3G57785.1	12837548
AT3G47930.1	PGSC0003DMT400049678	AT4G02580.1	12837548
AT3G47930.1	PGSC0003DMT400057110	AT4G16450.1	12837548
AT3G47930.1	PGSC0003DMT400029312	AT4G20150.1	12837548
AT3G47930.1	PGSC0003DMT400003262	AT5G08530.1	12837548
AT3G47930.1	PGSC0003DMT400074367	AT5G52840.1	12837548
AT3G47930.1	PGSC0003DMT400055230	AT5G67590.1	12837548
AT3G47930.1	PGSC0003DMT400053837	ATMG00070.1	12837548
AT3G47930.1	PGSC0003DMT400074912	ATMG00510.1	12837548
AT3G47930.1	PGSC0003DMT400002438	ATMG00513.1	12837548
AT3G47930.1	PGSC0003DMT400074648	ATMG00513.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079470.2.1	Tomato	nucleus	95.59	95.75
VIT_08s0007g05710.t01	Wine grape	mitochondrion	79.46	76.85
KRH71746	Soybean	mitochondrion	73.85	74.49
CDY24145	Canola	mitochondrion	73.85	72.5
Bra018100.1-P	Field mustard	mitochondrion	73.85	72.38
CDY36916	Canola	mitochondrion	73.85	72.38
AT3G47930.1	Thale cress	mitochondrion	73.51	70.98
TraesCS5D01G140400.2	Wheat	mitochondrion	68.76	69.35
TraesCS5B01G132600.1	Wheat	plastid	68.76	69.35
KXG27706	Sorghum	mitochondrion	68.42	68.89
HORVU5Hr1G043060.2	Barley	mitochondrion	68.25	68.84
Os11t0143500-01	Rice	mitochondrion	67.74	68.44
KRH33172	Soybean	mitochondrion	67.74	68.44
Os12t0139600-01	Rice	mitochondrion	67.4	68.1
TraesCS5A01G132300.2	Wheat	mitochondrion	68.08	65.1
GSMUA_Achr6P21390_001	Banana	cytosol	45.33	60.82
Zm00001d004956_P001	Maize	mitochondrion	69.1	45.02

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	EntrezGene:102577860	Gene3D:3.30.43.10	Gene3D:3.30.465.10	ProteinID:ABL75267
ProteinID:ABL75267.1	ProteinID:ACO57437	ProteinID:ACO57437.1	ProteinID:ADP09635	ProteinID:ADP09635.1	ProteinID:ADP09636
ProteinID:ADP09636.1	InterPro:ALO	EMBL:EF125868	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1
InterPro:FAD_lactone_oxidase	EMBL:FJ755844	InterPro:GL_DH	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003885	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0016020	GO:GO:0016491
GO:GO:0016614	GO:GO:0016633	GO:GO:0016899	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949
GO:GO:0080049	EMBL:HM587127	EMBL:HM587128	InterPro:IPR016166	InterPro:IPR016167	UniProt:M1AEF2
InterPro:Oxid_FAD_bind_N	PFAM:PF01565	PFAM:PF04030	EnsemblPlantsGene:PGSC0003DMG400008132	PGSC:PGSC0003DMG400008132	EnsemblPlants:PGSC0003DMT400020997
PIRSF:PIRSF000136	PFscan:PS51387	PANTHER:PTHR43762	PANTHER:PTHR43762:SF1	SUPFAM:SSF56176	TIGRFAMs:TIGR01676
UniParc:UPI0002953615	RefSeq:XP_006351263.1	SEG:seg	:	:	:

Description

L-galactono-1,4-lactone dehydrogenase protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008132]

Coordinates

chr10:+:58305327..58313142

Molecular Weight (calculated)

67167.7 Da

IEP (calculated)

8.946

GRAVY (calculated)

-0.495

Length

589 amino acids

Sequence
(BLAST)

001: MLRSFTSKRS LQSLLHHHHR RCRQNPQFPI FNPRLFSSSP GPPSSDAELR KYIGYTILVL GSAAATYYSF PFSENARDKK AQLFRYAPLP DDLHTVSNWS
101: GTHEVRTRTF LQPESIEELE GIVKEANVRK HKIRPVGSGL SPNGIGLTRA GMVNLALMDK VLSVDKEKKR VTVQAGIRVQ QLVDEIKEFG ITLQNFASIR
201: EQQIGGIVQV GAHGTGARLP PIDEQVISMK LVTPAKGTIE ISKEKDPEFF YLARCGLGGL GVVAEVTLQC VERQELVEHT FLSNMKDIKK NHKKFLSENK
301: HVKYLYIPYT DAVVVVTCNP MSKRKGPPKN KPKYTTEEAL QHVRDLYLES LTKYRGQVTD SGSPDEPEIV ELSFTELRDK LLAMDPLNKE HVIKVNKAEA
401: EYWRKSEGYR VGWSDEILGF DCGGHQWVSE TCFPAGTLSK PSMKDLEYIE ELMQLIEKES VPAPAPIEQR WTASSKSRMS PAYSLADDDI FSWVGIIMYL
501: PTMDTRQRRQ ITEEFFHYRH MTQAQLWGHY SAFEHWAKIE VPKDKEELAA LQARLKKKFP VDSYNQARKE LDPNRILSNN MLEKLFPSL

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.