Factsheet for PGSC0003DMT400003262

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 1
mitochondrion 9
extracellular 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087240.2.1	Tomato	endoplasmic reticulum, nucleus	99.18	99.18
CDX81109	Canola	cytosol	23.61	96.64
Bra005998.1-P	Field mustard	cytosol	79.88	95.58
Bra009347.1-P	Field mustard	cytosol	79.67	95.33
CDX69943	Canola	cytosol	22.59	94.83
CDY21546	Canola	cytosol	22.59	94.83
CDY60236	Canola	cytosol	22.59	94.83
CDY44779	Canola	mitochondrion	22.18	93.91
GSMUA_Achr1P23310_001	Banana	cytosol	69.61	93.39
AT5G08530.1	Thale cress	mitochondrion	91.38	91.56
VIT_19s0027g00780.t01	Wine grape	mitochondrion	88.71	90.95
KRH31690	Soybean	mitochondrion	89.73	90.66
KRH69090	Soybean	endoplasmic reticulum, mitochondrion, nucleus	89.73	90.66
KXG36814	Sorghum	mitochondrion	89.94	87.78
GSMUA_AchrUn_...	Banana	plastid	66.74	87.13
Zm00001d022341_P001	Maize	mitochondrion, plasma membrane	89.53	86.51
Zm00001d007048_P001	Maize	plasma membrane	89.32	86.31
TraesCS2A01G234200.2	Wheat	mitochondrion	89.12	85.94
TraesCS2B01G259100.2	Wheat	golgi	89.12	85.94
TraesCS2D01G237400.2	Wheat	mitochondrion	89.12	85.94
GSMUA_Achr1P12760_001	Banana	mitochondrion	85.83	85.13
Os07t0645400-01	Rice	mitochondrion	88.09	85.12
HORVU2Hr1G051740.1	Barley	cytosol, peroxisome, plastid	89.32	76.18
VIT_12s0121g00370.t01	Wine grape	cytosol	6.78	38.37

Protein Annotations

Gene3D:1.20.1440.230	EntrezGene:102578812	MapMan:2.4.1.1.1	Gene3D:3.10.20.600	Gene3D:3.40.50.11540	ProteinID:CAA58823
ProteinID:CAA58823.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020
GO:GO:0016491	GO:GO:0016651	GO:GO:0046872	GO:GO:0051287	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	GO:GO:0070469	InterPro:IPR037207	InterPro:IPR037225	InterPro:NADH-UbQ_OxRdtase_51kDa_CS	InterPro:NADH-UbQ_OxRdtase_suF
RefSeq:NP_001275120.1	InterPro:Nuo51_FMN-bd	InterPro:Nuo51_FMN-bd_sf	InterPro:Nuop51_4Fe4S-bd	InterPro:Nuop51_4Fe4S-bd_sf	PFAM:PF01512
PFAM:PF10531	PFAM:PF10589	EnsemblPlantsGene:PGSC0003DMG400001292	PGSC:PGSC0003DMG400001292	EnsemblPlants:PGSC0003DMT400003262	ScanProsite:PS00644
ScanProsite:PS00645	PANTHER:PTHR11780	PANTHER:PTHR11780:SF10	UniProt:Q43840	SMART:SM00928	SUPFAM:SSF140490
SUPFAM:SSF142019	SUPFAM:SSF142984	InterPro:Soluble_ligand-bd	TIGRFAMs:TIGR01959	UniParc:UPI00000ACAA0	EMBL:X83999
SEG:seg	:	:	:	:	:

Description

NADH dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400001292]

Coordinates

chr2:-:46729559..46733537

Molecular Weight (calculated)

53621.5 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.351

Length

487 amino acids

Sequence
(BLAST)

001: MAPIKGLLSL QRTALAQRSS ERWGLYGRLF STQAASTAST PQPTPPPPPP ERTHFGGLKD EDRIFTNLYG LHDPYLKGAM KRGDWYRTKD LVIKGSDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKTTD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRAKAAYIY IRGEYVNERK SLQKARQEAY
201: EAGLLGKNAC GSGYDFDVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFASFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSISLK ELIERHCGGV RGGWDNLLAV IPGGSSVPLL PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIREHAERE LQQAAAA

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.