Factsheet for GSMUA_Achr1P12760_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P23310_001	Banana	cytosol	72.1	97.52
Bra005998.1-P	Field mustard	cytosol	74.34	89.68
Bra009347.1-P	Field mustard	cytosol	74.34	89.68
GSMUA_Achr1P12780_001	Banana	cytosol	22.4	89.43
KXG36814	Sorghum	mitochondrion	87.37	85.97
Solyc02g087240.2.1	Tomato	endoplasmic reticulum, nucleus	85.13	85.83
PGSC0003DMT400003262	Potato	extracellular, mitochondrion	85.13	85.83
AT5G08530.1	Thale cress	mitochondrion	84.73	85.6
GSMUA_AchrUn_...	Banana	plastid	64.56	84.99
Os07t0645400-01	Rice	mitochondrion	86.76	84.52
Zm00001d007048_P001	Maize	plasma membrane	86.56	84.33
Zm00001d022341_P001	Maize	mitochondrion, plasma membrane	86.56	84.33
TraesCS2B01G259100.2	Wheat	golgi	86.56	84.16
TraesCS2D01G237400.2	Wheat	mitochondrion	86.56	84.16
TraesCS2A01G234200.2	Wheat	mitochondrion	86.35	83.96
CDY44779	Canola	mitochondrion	18.53	79.13
CDY60236	Canola	cytosol	18.53	78.45
CDY21546	Canola	cytosol	18.53	78.45
CDX69943	Canola	cytosol	18.53	78.45
CDX81109	Canola	cytosol	18.94	78.15
HORVU2Hr1G051740.1	Barley	cytosol, peroxisome, plastid	86.56	74.43

Protein Annotations

Gene3D:1.20.1440.230	MapMan:2.4.1.1.1	Gene3D:3.10.20.600	Gene3D:3.40.50.11540	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003954	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0046872	GO:GO:0051287
GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	GO:GO:0070469	EnsemblPlantsGene:GSMUA_Achr1G12760_001	EnsemblPlants:GSMUA_Achr1P12760_001
EnsemblPlants:GSMUA_Achr1T12760_001	InterPro:IPR037207	InterPro:IPR037225	UniProt:M0RZD4	InterPro:NADH-UbQ_OxRdtase_51kDa_CS	InterPro:NADH-UbQ_OxRdtase_suF
InterPro:Nuo51_FMN-bd	InterPro:Nuo51_FMN-bd_sf	InterPro:Nuop51_4Fe4S-bd	InterPro:Nuop51_4Fe4S-bd_sf	PFAM:PF01512	PFAM:PF10531
PFAM:PF10589	ScanProsite:PS00644	ScanProsite:PS00645	PANTHER:PTHR11780	PANTHER:PTHR11780:SF10	SMART:SM00928
SUPFAM:SSF140490	SUPFAM:SSF142019	SUPFAM:SSF142984	InterPro:Soluble_ligand-bd	TIGRFAMs:TIGR01959	UniParc:UPI0002959A49
SEG:seg	:	:	:	:	:

Description

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G12760_001]

Coordinates

chr1:+:9782800..9788208

Molecular Weight (calculated)

54166.3 Da

IEP (calculated)

8.088

GRAVY (calculated)

-0.240

Length

491 amino acids

Sequence
(BLAST)

001: MLAAQARILF SRIVISRVLQ SAPSFFVPLK NLSSIYRAGL IRHSSGWRSF SACRSFSTQT ATTGSTPQPP PPPPPPEKTH FGGLKDEDRI FTNLYGLHDP
101: LLKGAMKRGD WYRTKDLVVK GSDWIWSFMP KVSDGRPSYL VVNADESEPG TCKDREIMRH DPHKLLEGCL IAGVGMRATA AYIYVRGEYV NERLTLEKAR
201: KEAYQAGLLG KNACGSGYDF DVHIHFGAGA YICGEETALL ESLEGKQGKP RLKPPFPANA GLYGCPTTVT NVETVAVSPT ILRRGPEWFA SFGRKNNSGT
301: KLFCVSGHVN KPCTVEEEMS IPLKELIERH CGGVRGGWDN LLAVIPGGSS VPLLPKHICD DVMMDYDALK AVQSGLGTAA VIVMDKSTDV VDAIARLSYF
401: YKHESCGQCT PCREGTGWLW MIMERLKVGN AKLEEIDMLQ EVTKQIEGHT ICALGDAAAW PVQGLIRHFR PELERRIRER AERELLEAAA A

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.