Factsheet for Solyc02g087240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 2
mitochondrion 9
extracellular 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003262	Potato	extracellular, mitochondrion	99.18	99.18
CDX81109	Canola	cytosol	23.61	96.64
Bra005998.1-P	Field mustard	cytosol	79.88	95.58
Bra009347.1-P	Field mustard	cytosol	79.67	95.33
CDX69943	Canola	cytosol	22.59	94.83
CDY21546	Canola	cytosol	22.59	94.83
CDY60236	Canola	cytosol	22.59	94.83
GSMUA_Achr1P23310_001	Banana	cytosol	70.02	93.94
CDY44779	Canola	mitochondrion	22.18	93.91
AT5G08530.1	Thale cress	mitochondrion	91.38	91.56
VIT_19s0027g00780.t01	Wine grape	mitochondrion	88.3	90.53
KRH31690	Soybean	mitochondrion	89.12	90.04
KRH69090	Soybean	endoplasmic reticulum, mitochondrion, nucleus	89.12	90.04
KXG36814	Sorghum	mitochondrion	90.35	88.18
GSMUA_AchrUn_...	Banana	plastid	66.74	87.13
Zm00001d022341_P001	Maize	mitochondrion, plasma membrane	89.73	86.71
Zm00001d007048_P001	Maize	plasma membrane	89.53	86.51
TraesCS2A01G234200.2	Wheat	mitochondrion	88.91	85.74
TraesCS2B01G259100.2	Wheat	golgi	88.91	85.74
TraesCS2D01G237400.2	Wheat	mitochondrion	88.91	85.74
GSMUA_Achr1P12760_001	Banana	mitochondrion	85.83	85.13
Os07t0645400-01	Rice	mitochondrion	88.09	85.12
HORVU2Hr1G051740.1	Barley	cytosol, peroxisome, plastid	89.12	76.01
VIT_12s0121g00370.t01	Wine grape	cytosol	6.78	38.37

Protein Annotations

Gene3D:1.20.1440.230	MapMan:2.4.1.1.1	Gene3D:3.10.20.600	Gene3D:3.40.50.11540	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003954	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0046872	GO:GO:0051287
GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	GO:GO:0070469	InterPro:IPR037207	InterPro:IPR037225
UniProt:K4BBN1	InterPro:NADH-UbQ_OxRdtase_51kDa_CS	InterPro:NADH-UbQ_OxRdtase_suF	InterPro:Nuo51_FMN-bd	InterPro:Nuo51_FMN-bd_sf	InterPro:Nuop51_4Fe4S-bd
InterPro:Nuop51_4Fe4S-bd_sf	PFAM:PF01512	PFAM:PF10531	PFAM:PF10589	ScanProsite:PS00644	ScanProsite:PS00645
PANTHER:PTHR11780	PANTHER:PTHR11780:SF10	SMART:SM00928	SUPFAM:SSF140490	SUPFAM:SSF142019	SUPFAM:SSF142984
InterPro:Soluble_ligand-bd	EnsemblPlantsGene:Solyc02g087240.2	EnsemblPlants:Solyc02g087240.2.1	TIGRFAMs:TIGR01959	UniParc:UPI0002767F2D	SEG:seg

Description

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4BBN1]

Coordinates

chr2:+:49690908..49694457

Molecular Weight (calculated)

53649.5 Da

IEP (calculated)

8.117

GRAVY (calculated)

-0.352

Length

487 amino acids

Sequence
(BLAST)

001: MAPIKGLLSL QRTALAQRSS ERWGQYGRLF STQAASTAST PQPTPPPPPP ERTHFGGLKD EDRIFTNLYG LHDPYLKGAM KRGDWYRTKD LVIKGSDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKTTD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRARAAYIY IRGEYVNERL SLQKARQEAY
201: EAGLLGKNAC GSGYDFDVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFASFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSISLK ELLERHCGGV RGGWDNLLAV IPGGSSVPLL PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIREHAERE LQQAAAA

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.