Factsheet for VIT_19s0027g00780.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 8
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81109	Canola	cytosol	23.58	94.12
Bra005998.1-P	Field mustard	cytosol	80.42	93.86
Bra009347.1-P	Field mustard	cytosol	80.0	93.37
CDX69943	Canola	cytosol	22.53	92.24
CDY21546	Canola	cytosol	22.53	92.24
CDY60236	Canola	cytosol	22.53	92.24
CDY44779	Canola	mitochondrion	22.11	91.3
KRH31690	Soybean	mitochondrion	91.16	89.83
KRH69090	Soybean	endoplasmic reticulum, mitochondrion, nucleus	90.95	89.63
PGSC0003DMT400003262	Potato	extracellular, mitochondrion	90.95	88.71
Solyc02g087240.2.1	Tomato	endoplasmic reticulum, nucleus	90.53	88.3
AT5G08530.1	Thale cress	mitochondrion	90.32	88.27
KXG36814	Sorghum	mitochondrion	91.16	86.77
Zm00001d007048_P001	Maize	plasma membrane	91.16	85.91
Zm00001d022341_P001	Maize	mitochondrion, plasma membrane	91.16	85.91
TraesCS2A01G234200.2	Wheat	mitochondrion	91.16	85.74
Os07t0645400-01	Rice	mitochondrion	90.95	85.71
TraesCS2B01G259100.2	Wheat	golgi	90.95	85.54
TraesCS2D01G237400.2	Wheat	mitochondrion	90.95	85.54
HORVU2Hr1G051740.1	Barley	cytosol, peroxisome, plastid	90.74	75.48
VIT_12s0121g00370.t01	Wine grape	cytosol	7.16	39.53

Protein Annotations

Gene3D:1.20.1440.230	EntrezGene:100266461	wikigene:100266461	MapMan:2.4.1.1.1	Gene3D:3.10.20.600	Gene3D:3.40.50.11540
EMBL:AM486822	ProteinID:CAN73193	ProteinID:CAN73193.1	ProteinID:CCB47225	ProteinID:CCB47225.1	ncoils:Coil
UniProt:F6H4T6	EMBL:FN595234	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020
GO:GO:0016491	GO:GO:0016651	GO:GO:0046872	GO:GO:0051287	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	GO:GO:0070469	InterPro:IPR037207	InterPro:IPR037225	EntrezGene:LOC100266461	wikigene:LOC100266461
InterPro:NADH-UbQ_OxRdtase_51kDa_CS	InterPro:NADH-UbQ_OxRdtase_suF	InterPro:Nuo51_FMN-bd	InterPro:Nuo51_FMN-bd_sf	InterPro:Nuop51_4Fe4S-bd	InterPro:Nuop51_4Fe4S-bd_sf
PFAM:PF01512	PFAM:PF10531	PFAM:PF10589	ScanProsite:PS00644	ScanProsite:PS00645	PANTHER:PTHR11780
PANTHER:PTHR11780:SF10	SMART:SM00928	SUPFAM:SSF140490	SUPFAM:SSF142019	SUPFAM:SSF142984	InterPro:Soluble_ligand-bd
TIGR:TC52289	TIGR:TC56269	TIGRFAMs:TIGR01959	UniParc:UPI00015CA49D	ArrayExpress:VIT_19s0027g00780	EnsemblPlantsGene:VIT_19s0027g00780
EnsemblPlants:VIT_19s0027g00780.t01	unigene:Vvi.367	RefSeq:XP_002266661	RefSeq:XP_002266661.1	SEG:seg	:

Description

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6H4T6]

Coordinates

chr19:+:20058599..20062922

Molecular Weight (calculated)

52135.7 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.351

Length

475 amino acids

Sequence
(BLAST)

001: MALVSRQSKK WGPGCRAFST QAATTASASQ PPPPPPPPEK THFGGLKDED RIFTNLYGLH DPFLKGAMKR GDWYRTKDIV LKGSDWIVNE MKKSGLRGRG
101: GAGFPSGLKW SFMPKVSDGR PSYLVVNADE SEPGTCKDRE IMRHDPHKLL EGCLIAGVGM RATTAYIYIR GEYVNERKNL ERARKEAYEA GLLGKNACGS
201: GYDFDVHIHY GAGAYICGEE TALLESLEGK QGKPRLKPPF PANAGLYGCP TTVTNVETVA VSPTILRRGP EWFAGFGRKN NAGTKLYCVS GHVNKPCTVE
301: EEMSIPLKEL IERHCGGVRG GWDNLLAVIP GGSSVPLLPK HICDDVLMDY DALKAVQSGL GTAAVIVMDK STDVVDAIAR LSYFYKHESC GQCTPCREGT
401: GWLLMMMERL KVGNANLEEI DMLQEVTKQI EGHTICALGD AAAWPVQGLI RHFRPELERR IRERAERELL EVAAA

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.