Factsheet for Zm00001d007048_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 23198870
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36814	Sorghum	mitochondrion	96.23	97.19
Zm00001d022341_P001	Maize	mitochondrion, plasma membrane	97.02	97.02
GSMUA_Achr1P23310_001	Banana	cytosol	68.85	95.59
Bra005998.1-P	Field mustard	cytosol	76.59	94.84
Bra009347.1-P	Field mustard	cytosol	76.59	94.84
TraesCS2B01G259100.2	Wheat	golgi	93.85	93.66
TraesCS2A01G234200.2	Wheat	mitochondrion	93.85	93.66
TraesCS2D01G237400.2	Wheat	mitochondrion	93.65	93.47
CDX81109	Canola	cytosol	22.02	93.28
Os07t0645400-01	Rice	mitochondrion	92.86	92.86
CDY21546	Canola	cytosol	21.03	91.38
CDX69943	Canola	cytosol	21.03	91.38
CDY60236	Canola	cytosol	21.03	91.38
VIT_19s0027g00780.t01	Wine grape	mitochondrion	85.91	91.16
CDY44779	Canola	mitochondrion	20.63	90.43
AT5G08530.1	Thale cress	mitochondrion	87.1	90.33
Solyc02g087240.2.1	Tomato	endoplasmic reticulum, nucleus	86.51	89.53
KRH31690	Soybean	mitochondrion	85.52	89.42
PGSC0003DMT400003262	Potato	extracellular, mitochondrion	86.31	89.32
KRH69090	Soybean	endoplasmic reticulum, mitochondrion, nucleus	85.32	89.21
GSMUA_AchrUn_...	Banana	plastid	64.68	87.4
GSMUA_Achr1P12760_001	Banana	mitochondrion	84.33	86.56
HORVU2Hr1G051740.1	Barley	cytosol, peroxisome, plastid	93.65	82.66
VIT_12s0121g00370.t01	Wine grape	cytosol	5.95	34.88

Protein Annotations

Gene3D:1.20.1440.230	MapMan:2.4.1.1.1	Gene3D:3.10.20.600	Gene3D:3.40.50.11540	UniProt:B7ZYZ3	EMBL:BT054535
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651
GO:GO:0046872	GO:GO:0051287	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	GO:GO:0070469
InterPro:IPR037207	InterPro:IPR037225	InterPro:NADH-UbQ_OxRdtase_51kDa_CS	InterPro:NADH-UbQ_OxRdtase_suF	InterPro:Nuo51_FMN-bd	InterPro:Nuo51_FMN-bd_sf
InterPro:Nuop51_4Fe4S-bd	InterPro:Nuop51_4Fe4S-bd_sf	ProteinID:ONM25636.1	PFAM:PF01512	PFAM:PF10531	PFAM:PF10589
ScanProsite:PS00644	ScanProsite:PS00645	PANTHER:PTHR11780	PANTHER:PTHR11780:SF10	SMART:SM00928	SUPFAM:SSF140490
SUPFAM:SSF142019	SUPFAM:SSF142984	InterPro:Soluble_ligand-bd	TIGRFAMs:TIGR01959	UniParc:UPI00019174D5	EnsemblPlantsGene:Zm00001d007048
EnsemblPlants:Zm00001d007048_P001	EnsemblPlants:Zm00001d007048_T001	SEG:seg	:	:	:

Description

NADH dehydrogenase [ubiquinone] flavoprotein 1 mitochondrial

Coordinates

chr2:+:220862814..220866296

Molecular Weight (calculated)

55199.2 Da

IEP (calculated)

7.916

GRAVY (calculated)

-0.292

Length

504 amino acids

Sequence
(BLAST)

001: MALRRALLRS VNFSPDSKAA IEYFYSFSRA QSACSLNGAG LCPASRSFST QAATTSSTPQ PPPPPPPPEK THFGGLKDED RIFTNLYGLH DPFLKGAVKR
101: GDWYRTKDLV IKGADWIVNE MKKSGLRGRG GAGFPSGLKW SFMPKVSDGR PSYLVVNADE SEPGTCKDRE IMRQDPHKLL EGCLIAGVGM RASAAYIYIR
201: GEYVNERLNL EKARQEAYAA GLLGKNACGS GYDFDVHIHF GAGAYICGEE TALLESLEGK QGKPRLKPPF PANAGLYGCP TTVTNVETVA VSPTILRRGP
301: EWFASFGRKN NSGTKLYCIS GHVNKPCTVE EEMSIPLKEL LERHCGGVRG GWDNLLAVIP GGSSVPLLPK HICDDVLMDY DALKAVQSGL GTAAVIVMDK
401: STDVVDAIAR LSYFYKHESC GQCTPCREGT PWLWMIMERL KVGDAKLEEI DMLQEVTKQI EGHTICALGD AAAWPVQGLI RHFRPELERR IRERAERELL
501: AASA

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.