CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:

plastid 1
mitochondrion 9
extracellular 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31690	Soybean	mitochondrion	98.76	98.76
Bra009347.1-P	Field mustard	cytosol	79.25	93.86
Bra005998.1-P	Field mustard	cytosol	79.05	93.61
CDX81109	Canola	cytosol	23.03	93.28
CDY21546	Canola	cytosol	22.41	93.1
CDY60236	Canola	cytosol	22.41	93.1
CDX69943	Canola	cytosol	22.41	93.1
CDY44779	Canola	mitochondrion	21.99	92.17
VIT_19s0027g00780.t01	Wine grape	mitochondrion	89.63	90.95
AT5G08530.1	Thale cress	mitochondrion	90.87	90.12
PGSC0003DMT400003262	Potato	extracellular, mitochondrion	90.66	89.73
Solyc02g087240.2.1	Tomato	endoplasmic reticulum, nucleus	90.04	89.12
KXG36814	Sorghum	mitochondrion	89.63	86.57
Zm00001d022341_P001	Maize	mitochondrion, plasma membrane	89.42	85.52
Os07t0645400-01	Rice	mitochondrion	89.21	85.32
Zm00001d007048_P001	Maize	plasma membrane	89.21	85.32
TraesCS2A01G234200.2	Wheat	mitochondrion	88.8	84.75
TraesCS2B01G259100.2	Wheat	golgi	88.8	84.75
TraesCS2D01G237400.2	Wheat	mitochondrion	88.8	84.75
GSMUA_Achr1P12780_001	Banana	cytosol	20.54	80.49
HORVU2Hr1G051740.1	Barley	cytosol, peroxisome, plastid	89.0	75.13

Protein Annotations

Gene3D:1.20.1440.230	EntrezGene:100777389	MapMan:2.4.1.1.1	Gene3D:3.10.20.600	Gene3D:3.40.50.11540	EMBL:ACUP02000688
EnsemblPlantsGene:GLYMA_02G003300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020	GO:GO:0016491
GO:GO:0016651	GO:GO:0046872	GO:GO:0051287	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114
GO:GO:0070469	UniProt:I1JB64	InterPro:IPR037207	InterPro:IPR037225	EnsemblPlants:KRH69090	ProteinID:KRH69090
ProteinID:KRH69090.1	InterPro:NADH-UbQ_OxRdtase_51kDa_CS	InterPro:NADH-UbQ_OxRdtase_suF	InterPro:Nuo51_FMN-bd	InterPro:Nuo51_FMN-bd_sf	InterPro:Nuop51_4Fe4S-bd
InterPro:Nuop51_4Fe4S-bd_sf	PFAM:PF01512	PFAM:PF10531	PFAM:PF10589	ScanProsite:PS00644	ScanProsite:PS00645
PANTHER:PTHR11780	PANTHER:PTHR11780:SF10	SMART:SM00928	SUPFAM:SSF140490	SUPFAM:SSF142019	SUPFAM:SSF142984
InterPro:Soluble_ligand-bd	TIGRFAMs:TIGR01959	UniParc:UPI000233796B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:379746..384957

Molecular Weight (calculated)

52886.7 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.330

Length

482 amino acids

Sequence
(BLAST)

001: MRGILSVRTA LVQHRSEKLG LGFRLFSTQG ASTASTPQPP PPPPPPEKTH FGGLKDEDRI FTNLYGLHDP FLKGAMKRGD WHRTKDLVLK GTDWIVSEMK
101: KSGLRGRGGA GFPSGLKWSF MPKVSDGRPS YLVVNADESE PGTCKDREIM RHDPHKLLEG CLIAGVGMRA SAAYIYIRGE YVNERKNLEK ARQEAYAAGL
201: LGKNACGSGY DFDVHIHYGA GAYICGEETA LLESLEGKQG KPRLKPPFPA NAGLYGCPTT VTNVETVAVS PTILRRGPEW FASFGRKNNA GTKLFCVSGH
301: VNKPCTVEEE MSIPLKELIE RHCGGIRGGW DNLLAVIPGG SSVPLIPKHV CDDIFMDYDA LKAVGTGLGT AAVIVMDKST DVVDAIARLS YFYKHESCGQ
401: CTPCREGTGW LWTIMERMKV GNAKLEEIDM LQELTKQIEG HTICALGDAA AWPVQGLIKH FRPELERRIR EHAERELLQA TG

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.