Factsheet for GSMUA_Achr1P12780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44779	Canola	mitochondrion	47.15	50.43
CDX69943	Canola	cytosol	47.15	50.0
CDY21546	Canola	cytosol	47.15	50.0
CDY60236	Canola	cytosol	47.15	50.0
CDX81109	Canola	cytosol	47.97	49.58
GSMUA_Achr1P23310_001	Banana	cytosol	85.37	28.93
GSMUA_AchrUn_...	Banana	plastid	84.55	27.88
Bra005998.1-P	Field mustard	cytosol	84.55	25.55
Bra009347.1-P	Field mustard	cytosol	84.55	25.55
GSMUA_Achr1P12760_001	Banana	mitochondrion	89.43	22.4
AT5G08530.1	Thale cress	mitochondrion	85.37	21.6
KRH31690	Soybean	mitochondrion	80.49	20.54
KRH69090	Soybean	endoplasmic reticulum, mitochondrion, nucleus	80.49	20.54
VIT_12s0121g00370.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1440.230	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0051539	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr1G12780_001	EnsemblPlants:GSMUA_Achr1P12780_001	EnsemblPlants:GSMUA_Achr1T12780_001	InterPro:IPR037207	UniProt:M0RZD6	InterPro:NADH-UbQ_OxRdtase_51kDa_CS
InterPro:Nuop51_4Fe4S-bd	InterPro:Nuop51_4Fe4S-bd_sf	PFAM:PF10589	ScanProsite:PS00645	PANTHER:PTHR11780	PANTHER:PTHR11780:SF10
SMART:SM00928	SUPFAM:SSF140490	UniParc:UPI00029697BE	SEG:seg	:	:

Description

NADH-quinone oxidoreductase subunit F [Source:GMGC_GENE;Acc:GSMUA_Achr1G12780_001]

Coordinates

chr1:-:9817948..9818319

Molecular Weight (calculated)

13466.2 Da

IEP (calculated)

4.931

GRAVY (calculated)

-0.212

Length

123 amino acids

Sequence
(BLAST)

001: MMDYDALKAV QSGLDTAAVI VTDKSTDVVD AIARLSYLYK HESCGQCTPC REGTGWLWMI MKRLKVGNAK PEEIDMLQEV TKQIEGHTIC ALGGAAAWPV
101: QGLIRKENQG EGRERELLEA AAA

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.