Factsheet for GSMUA_Achr1P23310_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P12780_001	Banana	cytosol	28.93	85.37
Bra009347.1-P	Field mustard	cytosol	94.21	84.03
Bra005998.1-P	Field mustard	cytosol	93.94	83.78
GSMUA_Achr1P12760_001	Banana	mitochondrion	97.52	72.1
AT5G08530.1	Thale cress	mitochondrion	93.94	70.16
Solyc02g087240.2.1	Tomato	endoplasmic reticulum, nucleus	93.94	70.02
KXG36814	Sorghum	mitochondrion	96.14	69.94
PGSC0003DMT400003262	Potato	extracellular, mitochondrion	93.39	69.61
Zm00001d022341_P001	Maize	mitochondrion, plasma membrane	95.59	68.85
Zm00001d007048_P001	Maize	plasma membrane	95.59	68.85
Os07t0645400-01	Rice	mitochondrion	95.32	68.65
TraesCS2A01G234200.2	Wheat	mitochondrion	95.04	68.32
TraesCS2B01G259100.2	Wheat	golgi	95.04	68.32
TraesCS2D01G237400.2	Wheat	mitochondrion	95.04	68.32
GSMUA_AchrUn_...	Banana	plastid	65.01	63.27
CDY44779	Canola	mitochondrion	19.28	60.87
HORVU2Hr1G051740.1	Barley	cytosol, peroxisome, plastid	95.04	60.42
CDY60236	Canola	cytosol	19.28	60.34
CDY21546	Canola	cytosol	19.28	60.34
CDX69943	Canola	cytosol	19.28	60.34
CDX81109	Canola	cytosol	19.56	59.66

Protein Annotations

Gene3D:1.20.1440.230	MapMan:2.4.1.1.1	Gene3D:3.10.20.600	Gene3D:3.40.50.11540	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G23310_001	EnsemblPlants:GSMUA_Achr1P23310_001	EnsemblPlants:GSMUA_Achr1T23310_001	InterPro:IPR037207
InterPro:IPR037225	UniProt:M0S2D8	InterPro:NADH-UbQ_OxRdtase_51kDa_CS	InterPro:Nuo51_FMN-bd	InterPro:Nuo51_FMN-bd_sf	InterPro:Nuop51_4Fe4S-bd
InterPro:Nuop51_4Fe4S-bd_sf	PFAM:PF01512	PFAM:PF10531	PFAM:PF10589	ScanProsite:PS00644	ScanProsite:PS00645
PANTHER:PTHR11780	PANTHER:PTHR11780:SF10	SMART:SM00928	SUPFAM:SSF140490	SUPFAM:SSF142019	SUPFAM:SSF142984
InterPro:Soluble_ligand-bd	UniParc:UPI000295353C	:	:	:	:

Description

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G23310_001]

Coordinates

chr1:-:17609770..17615965

Molecular Weight (calculated)

39769.1 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.196

Length

363 amino acids

Sequence
(BLAST)

001: MPKVSDGRPS YLVVNADESE PGTCKDREIM RHDPHKLLEG CLIAGVGMRA TAAYIYIRGE YVNERLTLEK ARKEAYQAGL LGKNACGSGY DFDVHIHFGA
101: GAYICGEETA LLESLEGKQG KPRLKPPFPA NAGLYGCPTT VTNVETVAVS PTILRRGPEW LASFGRKNNS GTKLFCISGH VNKPCTVEEE MSIPLKELLE
201: RHCGGVRGGW DNLLAVIPGG SSVPLLPKHI CDDVLMDYDA LKAVQSGLGT AAVIVMDKST DVVDAIARLS YFYKHESCGQ CTPCREGTGW LWMIMERLKV
301: GNAMLEEIDM LQEVTKQIEG HTICALGDAA AWPVQGLIRH FRPELERRIR ERAQKQLLEA AAA

Best Arabidopsis Sequence Match ( AT5G08530.1 )
(BLAST)

001: MAPVRGILGL QRAVSIWKES NRLTPALRSF STQAASTSTT PQPPPPPPPP EKTHFGGLKD EDRIFTNLYG LHDPFLKGAM KRGDWHRTKD LVLKGTDWIV
101: NEMKKSGLRG RGGAGFPSGL KWSFMPKVSD GRPSYLVVNA DESEPGTCKD REIMRHDPHK LLEGCLIAGV GMRASAAYIY IRGEYVNERL NLEKARREAY
201: AAGLLGKNAC GSGYDFEVYI HFGAGAYICG EETALLESLE GKQGKPRLKP PFPANAGLYG CPTTVTNVET VAVSPTILRR GPEWFSSFGR KNNAGTKLFC
301: ISGHVNKPCT VEEEMSIPLK ELIERHCGGV RGGWDNLLAI IPGGSSVPLI PKNICEDVLM DFDALKAVQS GLGTAAVIVM DKSTDVVDAI ARLSYFYKHE
401: SCGQCTPCRE GTGWLWMIME RMKVGNAKLE EIDMLQEVTK QIEGHTICAL GDAAAWPVQG LIRHFRPELE RRIRERAERE LLQAAA

Arabidopsis Description

CI51NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UJ45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.