Factsheet for PGSC0003DMT400074912

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G115900.1	Barley	cytosol	16.67	43.08
PGSC0003DMT400079469	Potato	mitochondrion	61.9	40.31
ATMG00510.1	Thale cress	mitochondrion	67.86	28.93
TraesCS3B01G122100.1	Wheat	mitochondrion	18.45	28.7
TraesCS4D01G160900.1	Wheat	cytosol	19.05	28.07
VIT_00s0332g00160.t01	Wine grape	cytosol, mitochondrion, nucleus	44.64	25.08
HORVU5Hr1G042630.1	Barley	cytosol	29.17	23.33
TraesCS1D01G258400.1	Wheat	cytosol	19.64	21.43
Zm00001d040819_P001	Maize	cytosol	19.64	21.43
TraesCSU01G157900.1	Wheat	cytosol	19.64	21.43
TraesCS4D01G138800.1	Wheat	cytosol	19.64	21.43
TraesCS4A01G069400.1	Wheat	cytosol	19.64	21.43
TraesCS3B01G013700.1	Wheat	cytosol	19.64	21.43
TraesCS1B01G385800.1	Wheat	cytosol	19.64	21.43
TraesCS1B01G262900.1	Wheat	cytosol	19.64	21.43
TraesCS1A01G156900.1	Wheat	cytosol	19.05	20.78
TraesCS4B01G146100.1	Wheat	cytosol	19.05	20.78
TraesCS4B01G237800.1	Wheat	cytosol	19.05	20.78
TraesCS7A01G526400.1	Wheat	cytosol	19.05	20.78
TraesCS7D01G075700.1	Wheat	cytosol	19.05	20.78
TraesCS7A01G387700.1	Wheat	cytosol	18.45	20.13
HORVU6Hr1G040930.1	Barley	cytosol, mitochondrion, nucleus	17.86	19.48
Solyc10g052800.1.1	Tomato	cytosol	10.71	17.31
TraesCS3A01G269100.1	Wheat	cytosol	14.29	17.02
PGSC0003DMT400022652	Potato	mitochondrion	20.24	14.78
Solyc01g065770.1.1	Tomato	mitochondrion	10.71	14.29
CDY65733	Canola	cytosol	51.79	13.92
HORVU4Hr1G059530.1	Barley	mitochondrion	18.45	12.97
OQU91808	Sorghum	cytosol	1.19	2.94
KRH15676	Soybean	mitochondrion	2.38	2.03

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114
InterPro:IPR038290	UniProt:M1CUC4	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346
EnsemblPlantsGene:PGSC0003DMG400029134	PGSC:PGSC0003DMG400029134	EnsemblPlants:PGSC0003DMT400074912	PANTHER:PTHR11993	PANTHER:PTHR11993:SF10	SUPFAM:SSF56762
UniParc:UPI000296B326	:	:	:	:	:

Description

NADH-ubiquinone oxidoreductase 49 kDa subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400029134]

Coordinates

chr6:+:18591268..18592125

Molecular Weight (calculated)

19316.4 Da

IEP (calculated)

9.032

GRAVY (calculated)

-0.377

Length

168 amino acids

Sequence
(BLAST)

001: MSTGNRIWKQ PLVDIGTVTA QQAKDWGFSG VMLRGSVVCW DLRKAEPYDV HDQLDHDIPV GTRRDRYDRY CILIEEMRQS VRIIVQCLDQ MPSGMIKADD
101: RKLCPPSRSR MKLSMESVVH YRTASGRAVS FVVVLHDSNV LRPRSERACQ RTTVVPLLSE LDRNHLIH

Best Arabidopsis Sequence Match ( ATMG00510.1 )
(BLAST)

001: MTTRKRQIKN FTSNFGPQHP AAHGVSRLVL EMNGEVVERA EPHIGSLHRG TEKLIEYKTY LQALPYSDRS DYVSMMAQEH AHSSAVEKLL NCEVPLRAQY
101: IRVLFREITR ISNHSLALTT HAMDVGALTP FLWAFEEREK LLEFYERVSG ARMHASFIRP GGVAQDLPLG LCRDIDSFTQ QFASRIDELE EMSTGNRIWK
201: QRLVDIGTVT AQQAKDWGFS GVMLRGPGVC WDSRRAAPYD VHDQSDLDVP VGTRGDRYDR YCIRIEEMRQ SLRIIVQCLN QMPSGMIKAD DRKLCPPSRC
301: RMKLSMESSI HHFELYTEGF SVPASSTYTA VEAPKGEFGV FLVSNGSNRP YRRKIRAPGS AHSQGLDSMS KHHMPADVVT IIGTQDIVFG EVDR

Arabidopsis Description

NAD7Nad7 [Source:UniProtKB/TrEMBL;Acc:G1C2X4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.