Factsheet for PGSC0003DMT400022652

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95226	Canola	cytosol	78.7	75.42
CDY19660	Canola	cytosol	78.7	75.42
CDY21195	Canola	cytosol	78.7	75.42
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	22.17	71.83
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	74.35	70.37
CDX90199	Canola	cytosol, mitochondrion, plastid	26.52	68.54
HORVU6Hr1G037410.1	Barley	extracellular	75.22	59.86
HORVU4Hr1G027710.1	Barley	mitochondrion	53.04	58.1
HORVU1Hr1G048080.1	Barley	cytosol	75.22	54.4
TraesCS1B01G405900.1	Wheat	cytosol	74.78	50.15
HORVU5Hr1G005410.1	Barley	cytosol, plastid	75.22	49.57
ATCG01110.1	Thale cress	cytosol	78.7	46.06
CDY03033	Canola	plastid	77.83	45.55
CAA33911	Rice	mitochondrion, plastid	76.52	44.78
GRMZM5G853723_P01	Maize	plastid	76.52	44.78
HORVU0Hr1G036480.1	Barley	cytosol, mitochondrion, plastid	75.65	44.27
HORVU0Hr1G024830.2	Barley	cytosol	75.65	44.27
TraesCS2D01G243700.1	Wheat	plastid	75.22	44.02
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	74.35	43.62
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	73.91	43.37
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	73.91	43.26
AGP50801	Barley	cytosol	66.09	41.08
KRG99586	Soybean	cytosol, mitochondrion, plastid	49.57	34.23
PGSC0003DMT400074912	Potato	cytosol	14.78	20.24
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	18.7	15.09
PGSC0003DMT400079469	Potato	mitochondrion	14.35	12.79
Solyc07g032420.1.1	Tomato	cytosol	3.04	3.76
CDY21194	Canola	cytosol	0.0	0.0
CDY19659	Canola	cytosol	0.0	0.0
CDX95225	Canola	cytosol	0.0	0.0
VIT_06s0004g07410.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0016655	GO:GO:0019684
GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	UniProt:M1AH04	InterPro:NADH_Q_OxRdtase_suD
InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	EnsemblPlantsGene:PGSC0003DMG401008783	PGSC:PGSC0003DMG401008783	EnsemblPlants:PGSC0003DMT400022652
PANTHER:PTHR11993	SUPFAM:SSF56762	UniParc:UPI0002950D7D	:	:	:

Description

NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG401008783]

Coordinates

chr11:-:28540212..28541472

Molecular Weight (calculated)

26960.7 Da

IEP (calculated)

7.514

GRAVY (calculated)

-0.477

Length

230 amino acids

Sequence
(BLAST)

001: MPRGGRRPTV RELLSRRRSN DGVAEYQKLI SRNPIFLERV EGVGIIGRDE AVNWGLSGPM LRAFGIEWDL RKVDHYESYD EFDWQVQWQR EGDSLARYLV
101: RIGEMTESIK IIQQAMEGIP GGPYENLEMR RFDRLKDPEW NDFEYRFISK KPSPTFELSK QELYVRVEAP KGELGIFLIG DQSIFPWRWK IRPPGFINLQ
201: ILPQLVKRMK LADIMTILGS IDIIMGEVDR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.