CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95226	Canola	cytosol	60.56	99.17
CDY19660	Canola	cytosol	60.56	99.17
CDY21195	Canola	cytosol	60.56	99.17
ATCG01110.1	Thale cress	cytosol	98.98	98.98
CDX95225	Canola	cytosol	33.59	97.78
CDY19659	Canola	cytosol	33.59	97.78
CDY21194	Canola	cytosol	33.59	97.78
CAA33911	Rice	mitochondrion, plastid	85.24	85.24
TraesCS2D01G243700.1	Wheat	plastid	84.48	84.48
GRMZM5G853723_P01	Maize	plastid	83.97	83.97
TraesCS1B01G405900.1	Wheat	cytosol	73.28	83.97
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	82.7	82.91
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	82.19	82.4
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	82.19	82.19
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	50.38	81.48
CDX90199	Canola	cytosol, mitochondrion, plastid	18.32	80.9
VIT_06s0004g07410.t01	Wine grape	cytosol	18.07	78.02
PGSC0003DMT400022652	Potato	mitochondrion	45.55	77.83
VIT_10s0116g00060.t01	Wine grape	plasma membrane	56.49	50.34
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	13.23	18.25
CDY65733	Canola	cytosol	18.83	11.84

Protein Annotations

MapMan:1.1.8.1.2.1	Gene3D:1.10.645.20	GO:A0A078ETY5	EnsemblPlants:CDY03033	ProteinID:CDY03033	ProteinID:CDY03033.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0048038
GO:GO:0050136	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00115361001	InterPro:IPR038290	HAMAP:MF_01358
InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NADH_UbQ_OxRdtase_49kDa_CS	InterPro:NDH1_su_D/H	InterPro:NiFe-Hase_large	PFAM:PF00346
ScanProsite:PS00535	PANTHER:PTHR11993	SUPFAM:SSF56762	UniParc:UPI0004EE7B40	SEG:seg	:

Description

BnaC07g21940D

Coordinates

chrLK031939:+:521383..522564

Molecular Weight (calculated)

45377.3 Da

IEP (calculated)

5.365

GRAVY (calculated)

-0.175

Length

393 amino acids

Sequence
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKVDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDKKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LRGDQSGFPG RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.