CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19660	Canola	cytosol	100.0	100.0
CDY21195	Canola	cytosol	100.0	100.0
CDX90199	Canola	cytosol, mitochondrion, plastid	30.0	80.9
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	81.67	80.66
PGSC0003DMT400022652	Potato	mitochondrion	75.42	78.7
Solyc08g022160.1.1	Tomato	cytosol	19.17	63.01
CDY03033	Canola	plastid	99.17	60.56
TraesCS1B01G405900.1	Wheat	cytosol	81.25	56.85
GRMZM5G853723_P01	Maize	plastid	82.92	50.64
CAA33911	Rice	mitochondrion, plastid	82.5	50.38
TraesCS2D01G243700.1	Wheat	plastid	81.25	49.62
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	80.83	49.49
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	80.0	48.98
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	80.0	48.85
KRG99586	Soybean	cytosol, mitochondrion, plastid	55.0	39.64
VIT_10s0116g00060.t01	Wine grape	plasma membrane	62.08	33.79
HORVU3Hr1G075000.1	Barley	cytosol, mitochondrion	16.25	19.7
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	16.67	14.04
CDY65733	Canola	cytosol	19.17	7.36
HORVU1Hr1G065340.1	Barley	cytosol	6.25	6.07
Solyc08g022170.1.1	Tomato	plastid	0.0	0.0
CDY21194	Canola	cytosol	0.0	0.0
CDY19659	Canola	cytosol	0.0	0.0
VIT_06s0004g07410.t01	Wine grape	cytosol	0.0	0.0
CDX95225	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:A0A078FZ90	UniProt:A0A078FZ90	EnsemblPlants:CDX95226	ProteinID:CDX95226
ProteinID:CDX95226.1	ProteinID:CDY19660.1	ProteinID:CDY21195.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00100834001	InterPro:IPR038290	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large
PFAM:PF00346	PANTHER:PTHR11993	PANTHER:PTHR11993:SF27	SUPFAM:SSF56762	UniParc:UPI0004EF2B2D	SEG:seg

Description

BnaC09g16440DBnaA01g34260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ90]

Coordinates

chrLK031887:+:601531..602253

Molecular Weight (calculated)

27891.7 Da

IEP (calculated)

4.749

GRAVY (calculated)

-0.308

Length

240 amino acids

Sequence
(BLAST)

001: MHNFFRIGGI AADLPYGWID KCLDFCDYFL TEVVEYQKLI TRNPIFLERV EGVGIIGGEE AINWGLSGPM LRASGIPWDL RKVDRYESYD EFEWEIQWQK
101: QGDSLARYLV RLSEMTESIK IIQQALEGLP GGPYENLESR GFDKKRNPEW NDFEYRFISK KPSPTFELSK QELYVRVEAP KGELGIFLIG DQSGFPWRWK
201: IRPPGFINLQ ILPELVKRMK LADIMTILGS IDIIMGEVDR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.