CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	74.16	92.96
CDX95226	Canola	cytosol	80.9	30.0
CDY19660	Canola	cytosol	80.9	30.0
CDY21195	Canola	cytosol	80.9	30.0
PGSC0003DMT400022652	Potato	mitochondrion	68.54	26.52
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	65.17	23.87
CDY03033	Canola	plastid	80.9	18.32
ATCG01110.1	Thale cress	cytosol	80.9	18.32
TraesCS1B01G405900.1	Wheat	cytosol	66.29	17.2
CAA33911	Rice	mitochondrion, plastid	66.29	15.01
TraesCS2D01G243700.1	Wheat	plastid	66.29	15.01
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	65.17	14.8
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	65.17	14.8
GRMZM5G853723_P01	Maize	plastid	65.17	14.76
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	64.04	14.5
VIT_10s0116g00060.t01	Wine grape	plasma membrane	62.92	12.7
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	26.97	8.42
CDY65733	Canola	cytosol	29.21	4.16
CDY21194	Canola	cytosol	0.0	0.0
CDY19659	Canola	cytosol	0.0	0.0
CDX95225	Canola	cytosol	0.0	0.0
VIT_06s0004g07410.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:A0A078DNX2	EnsemblPlants:CDX90199	ProteinID:CDX90199	ProteinID:CDX90199.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016651	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00150753001	InterPro:IPR038290
InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	PANTHER:PTHR11993	PANTHER:PTHR11993:SF27
SUPFAM:SSF56762	UniParc:UPI0004EDBF6D	:	:	:	:

Description

BnaA08g17850D

Coordinates

chrLK031862:-:592015..592284

Molecular Weight (calculated)

10518.7 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.493

Length

89 amino acids

Sequence
(BLAST)

1: MGLSGPMLRA SGIPWDLRKV DRYESYDEFE WEIQWQKQGD SLARYLVRLS EMTESIKIIQ QVLERLPGGP YENLDYIVIS SKRLLNRIK

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.