Factsheet for Bra010822.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90199	Canola	cytosol, mitochondrion, plastid	92.96	74.16
PGSC0003DMT400022652	Potato	mitochondrion	71.83	22.17
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	69.01	20.16
ATCG01110.1	Thale cress	cytosol	87.32	15.78
TraesCS1B01G405900.1	Wheat	cytosol	70.42	14.58
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	70.42	12.76
CAA33911	Rice	mitochondrion, plastid	70.42	12.72
TraesCS2D01G243700.1	Wheat	plastid	70.42	12.72
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	69.01	12.5
GRMZM5G853723_P01	Maize	plastid	69.01	12.47
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	67.61	12.21
VIT_10s0116g00060.t01	Wine grape	plasma membrane	67.61	10.88
KRG99586	Soybean	cytosol, mitochondrion, plastid	43.66	9.31
Solyc08g022160.1.1	Tomato	cytosol	8.45	8.22
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	30.99	7.72
HORVU1Hr1G065340.1	Barley	cytosol	14.08	4.05
Solyc08g022170.1.1	Tomato	plastid	0.0	0.0
HORVU3Hr1G075000.1	Barley	cytosol, mitochondrion	0.0	0.0
VIT_06s0004g07410.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	EnsemblPlantsGene:Bra010822	EnsemblPlants:Bra010822.1	EnsemblPlants:Bra010822.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016651
GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	UniProt:M4D2W9	InterPro:NADH_Q_OxRdtase_suD
InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	PANTHER:PTHR11993	SUPFAM:SSF56762	UniParc:UPI00025470E4

Description

ATCG01110 (E=5e-030) NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4.

Coordinates

chrA08:+:16654852..16655067

Molecular Weight (calculated)

8218.9 Da

IEP (calculated)

5.052

GRAVY (calculated)

-0.508

Length

71 amino acids

Sequence
(BLAST)

1: MGLSGPMLRA SGIPWDLRKV DRYESYDEFE CEIQRQKQGD SLTRYLVRLS EMTESIKIIQ QVLERLPGGS L

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.