Factsheet for Solyc08g022170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95225	Canola	cytosol	79.26	79.26
CDY19659	Canola	cytosol	79.26	79.26
CDY21194	Canola	cytosol	79.26	79.26
HORVU3Hr1G075000.1	Barley	cytosol, mitochondrion	77.78	53.03
HORVU1Hr1G065340.1	Barley	cytosol	80.74	44.13
Solyc02g011810.1.1	Tomato	cytosol	16.3	39.29
KRG99586	Soybean	cytosol, mitochondrion, plastid	81.48	33.03
ATCG01110.1	Thale cress	cytosol	81.48	27.99
Solyc09g009360.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	16.3	12.22
Solyc10g047470.1.1	Tomato	mitochondrion	8.15	11.96
Solyc01g065770.1.1	Tomato	mitochondrion	11.11	11.9
Solyc01g017740.1.1	Tomato	nucleus	8.15	11.34
Solyc07g042310.1.1	Tomato	cytosol, mitochondrion, nucleus	2.96	6.45
Solyc10g052800.1.1	Tomato	cytosol	1.48	1.92
Solyc10g047460.1.1	Tomato	cytosol	0.0	0.0
Solyc12g035590.1.1	Tomato	cytosol	0.0	0.0
Solyc01g011410.1.1	Tomato	nucleus	0.0	0.0
Solyc08g022160.1.1	Tomato	cytosol	0.0	0.0
Solyc07g032420.1.1	Tomato	cytosol	0.0	0.0
CDY21195	Canola	cytosol	0.0	0.0
CDY19660	Canola	cytosol	0.0	0.0
CDX95226	Canola	cytosol	0.0	0.0
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016651	GO:GO:0016655
GO:GO:0019684	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	UniProt:K4CJN7
InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NADH_UbQ_OxRdtase_49kDa_CS	InterPro:NiFe-Hase_large	ScanProsite:PS00535	PANTHER:PTHR11993	SUPFAM:SSF56762
EnsemblPlantsGene:Solyc08g022170.1	EnsemblPlants:Solyc08g022170.1.1	TMHMM:TMhelix	UniParc:UPI000276BA9A	:	:

Description

No Description!

Coordinates

chr8:+:31765906..31766313

Molecular Weight (calculated)

15396.9 Da

IEP (calculated)

5.567

GRAVY (calculated)

0.184

Length

135 amino acids

Sequence
(BLAST)

001: MTTSTTRKDL MIVNIGPQHP SMHGVLRFIV TLDGEDVVDC EPILGYLHRG AEKIVENRTI KQYFPYVTCW DYLATMFTEA IAINGPEQLG NIEVPKRDSY
101: IRVIMLELSR IASHLLWLGL FMADIGAQTS LFYIF

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.