Factsheet for Solyc01g011410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g022160.1.1	Tomato	cytosol	69.86	69.86
Solyc10g047470.1.1	Tomato	mitochondrion	67.12	53.26
Solyc02g011810.1.1	Tomato	cytosol	27.4	35.71
HORVU4Hr1G027710.1	Barley	mitochondrion	82.19	28.57
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	86.3	25.93
HORVU6Hr1G037410.1	Barley	extracellular	86.3	21.8
HORVU1Hr1G048080.1	Barley	cytosol	86.3	19.81
TraesCS1B01G405900.1	Wheat	cytosol	83.56	17.78
HORVU5Hr1G005410.1	Barley	cytosol, plastid	84.93	17.77
AGP50801	Barley	cytosol	86.3	17.03
Solyc07g042310.1.1	Tomato	cytosol, mitochondrion, nucleus	13.7	16.13
CAA33911	Rice	mitochondrion, plastid	86.3	16.03
HORVU0Hr1G036480.1	Barley	cytosol, mitochondrion, plastid	86.3	16.03
HORVU0Hr1G024830.2	Barley	cytosol	86.3	16.03
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	84.93	15.82
TraesCS2D01G243700.1	Wheat	plastid	84.93	15.78
GRMZM5G853723_P01	Maize	plastid	84.93	15.78
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	83.56	15.56
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	83.56	15.52
VIT_10s0116g00060.t01	Wine grape	plasma membrane	89.04	14.74
Solyc09g009360.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	30.14	12.22
Solyc01g065770.1.1	Tomato	mitochondrion	20.55	11.9
Solyc10g052800.1.1	Tomato	cytosol	16.44	11.54
Solyc01g017740.1.1	Tomato	nucleus	5.48	4.12
Solyc07g032420.1.1	Tomato	cytosol	8.22	3.23
Solyc08g022170.1.1	Tomato	plastid	0.0	0.0
Solyc10g047460.1.1	Tomato	cytosol	0.0	0.0
Solyc12g035590.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0016655	GO:GO:0019684
GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	UniProt:K4ATX7	InterPro:NADH_Q_OxRdtase_suD
InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	PANTHER:PTHR11993	PANTHER:PTHR11993:SF27	SUPFAM:SSF56762
EnsemblPlantsGene:Solyc01g011410.1	EnsemblPlants:Solyc01g011410.1.1	UniParc:UPI00027620CA	:	:	:

Description

No Description!

Coordinates

chr1:-:9006477..9006698

Molecular Weight (calculated)

8328.2 Da

IEP (calculated)

4.911

GRAVY (calculated)

0.101

Length

73 amino acids

Sequence
(BLAST)

1: MRMMHNYFRI GGVAADLPYG WIDKCLDFCD YFLTGVAEYQ KLITRNPIFL ERVEGVGIIG RDEALNWGLS GPI

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.