CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G036480.1	Barley	cytosol, mitochondrion, plastid	97.46	97.46
TraesCS2D01G243700.1	Wheat	plastid	97.46	97.46
AGP50801	Barley	cytosol	91.6	97.3
HORVU1Hr1G048080.1	Barley	cytosol	78.37	96.86
HORVU6Hr1G037410.1	Barley	extracellular	70.99	96.54
HORVU0Hr1G024830.2	Barley	cytosol	95.67	95.67
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	95.17	95.41
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	94.91	94.91
GRMZM5G853723_P01	Maize	plastid	94.91	94.91
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	94.4	94.64
Solyc02g011810.1.1	Tomato	cytosol	12.72	89.29
CDX95225	Canola	cytosol	30.28	88.15
CDY19659	Canola	cytosol	30.28	88.15
CDY21194	Canola	cytosol	30.28	88.15
CAA33949	Rice	cytosol	12.47	87.5
HORVU5Hr1G005410.1	Barley	cytosol, plastid	77.1	86.82
Solyc01g011410.1.1	Tomato	nucleus	16.03	86.3
CDY03033	Canola	plastid	85.24	85.24
ATCG01110.1	Thale cress	cytosol	84.99	84.99
CDY21195	Canola	cytosol	50.38	82.5
CDY19660	Canola	cytosol	50.38	82.5
CDX95226	Canola	cytosol	50.38	82.5
VIT_06s0004g07410.t01	Wine grape	cytosol	18.58	80.22
PGSC0003DMT400022652	Potato	mitochondrion	44.78	76.52
KRG99586	Soybean	cytosol, mitochondrion, plastid	62.09	73.27
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	12.72	70.42
CDX90199	Canola	cytosol, mitochondrion, plastid	15.01	66.29
VIT_10s0116g00060.t01	Wine grape	plasma membrane	54.45	48.53
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	14.5	20.0
Solyc07g032420.1.1	Tomato	cytosol	1.78	3.76

Protein Annotations

MapMan:1.1.8.1.2.1	Gene3D:1.10.645.20	EntrezGene:3131485	EntrezGene:3131489	UniProt:A0A0K0LRC8	ProteinID:AAS46153.1
ProteinID:AAS46162.1	ProteinID:AJC99372.1	ProteinID:AJC99459.1	EnsemblPlants:CAA33911	EnsemblPlantsGene:CAA33911	ProteinID:CAA33911
ProteinID:CAA33911.1	ProteinID:CAA33949.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003735	GO:GO:0003824
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005840	GO:GO:0006091	GO:GO:0006412	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0016655
GO:GO:0019538	GO:GO:0019684	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290
HAMAP:MF_01358	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NADH_UbQ_OxRdtase_49kDa_CS	InterPro:NDH1_su_D/H	RefSeq:NP_039440.1
RefSeq:NP_039450.1	InterPro:NiFe-Hase_large	UniProt:P0C337	PFAM:PF00346	ScanProsite:PS00535	PANTHER:PTHR11993
Reactome:R-HSA-611105	Reactome:R-HSA-6799198	SUPFAM:SSF56762	UniParc:UPI00001308BA	:	:

Description

ndhHNADH dehydrogenase 49kDa protein

Coordinates

chrPt:-:112708..113889

Molecular Weight (calculated)

45687.8 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.132

Length

393 amino acids

Sequence
(BLAST)

001: MSLPLTRKDL MIVNMGPQHP SMHGVLRLIV TLDGEDVIDC EPILGYLHRG MEKIAENRTI IQYLPYVTRW DYLATMFTEA ITVNAPEFLE NIQIPQRASY
101: IRVIMLELSR IASHLLWLGP FMADLGAQTP FFYIFREREL IYDLFEAATG MRMMHNYFRI GGVAADLPYG WIDKCLDFCD YFLRGVIEYQ QLITQNPIFL
201: ERVEGVGFIS GEEAVNWGLS GPMLRASGIQ WDLRKVDLYE SYNQFDWKVQ WQKEGDSLAR YLVRIGEMRE SIKIIQQAVE KIPGGPYENL EVRRFKKAKN
301: SEWNDFEYRF LGKKPSPNFE LSKQELYARV EAPKGELGIY LVGDDSLFPW RWKIRPPGFI NLQILPQLVK KMKLADIMTI LGSIDIIMGE VDR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.