CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95225	Canola	cytosol	100.0	100.0
CDY21194	Canola	cytosol	100.0	100.0
Solyc08g022170.1.1	Tomato	plastid	79.26	79.26
VIT_06s0004g07410.t01	Wine grape	cytosol	51.85	76.92
HORVU3Hr1G075000.1	Barley	cytosol, mitochondrion	82.22	56.06
HORVU1Hr1G065340.1	Barley	cytosol	85.19	46.56
KRG99586	Soybean	cytosol, mitochondrion, plastid	82.96	33.63
CDY03033	Canola	plastid	97.78	33.59
CAA33911	Rice	mitochondrion, plastid	88.15	30.28
TraesCS2D01G243700.1	Wheat	plastid	88.15	30.28
TraesCSU01G237200.1	Wheat	cytosol, mitochondrion, plastid	84.44	29.08
GRMZM5G853723_P01	Maize	plastid	84.44	29.01
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	83.7	28.83
TraesCS7B01G080500.1	Wheat	cytosol, mitochondrion, plastid	83.7	28.75
TraesCS1B01G405900.1	Wheat	cytosol	55.56	21.87
VIT_10s0116g00060.t01	Wine grape	plasma membrane	40.0	12.24
CDY65733	Canola	cytosol	17.04	3.68
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	4.44	2.11
Solyc08g022160.1.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400022652	Potato	mitochondrion	0.0	0.0
TraesCS5D01G376800.1	Wheat	cytosol, mitochondrion, plastid	0.0	0.0
CDY21195	Canola	cytosol	0.0	0.0
CDY19660	Canola	cytosol	0.0	0.0
CDX95226	Canola	cytosol	0.0	0.0
CDX90199	Canola	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY19659	EnsemblPlantsGene:GSBRNA2T00009362001	Gene3D:1.10.645.20	GO:A0A078G714	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0055114	InterPro:IPR038290	InterPro:NADH_Q_OxRdtase_suD_sf
InterPro:NADH_UbQ_OxRdtase_49kDa_CS	InterPro:NiFe-Hase_large	PANTHER:PTHR11993	ProteinID:CDY19659	ProteinID:CDY19659.1	ProteinID:CDY21194.1
ScanProsite:PS00535	SUPFAM:SSF56762	UniParc:UPI0004EE9A62	UniProt:A0A078G714	MapMan:35.1	:

Description

BnaC09g29150DBnaA01g34250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G714]

Coordinates

chrLK032099:+:289603..290010

Molecular Weight (calculated)

15352.1 Da

IEP (calculated)

7.071

GRAVY (calculated)

0.191

Length

135 amino acids

Sequence
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAPNP FFFIF

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.