Factsheet for TraesCS5D01G376800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g011410.1.1	Tomato	nucleus	25.93	86.3
HORVU4Hr1G027710.1	Barley	mitochondrion	73.66	85.24
CDX95226	Canola	cytosol	80.66	81.67
CDY21195	Canola	cytosol	80.66	81.67
CDY19660	Canola	cytosol	80.66	81.67
PGSC0003DMT400022652	Potato	mitochondrion	70.37	74.35
Bra010822.1-P	Field mustard	cytosol, mitochondrion, plastid	20.16	69.01
TraesCS1B01G405900.1	Wheat	cytosol	93.83	66.47
CDX90199	Canola	cytosol, mitochondrion, plastid	23.87	65.17
TraesCS2D01G243700.1	Wheat	plastid	96.71	59.8
TraesCS1D01G184000.1	Wheat	cytosol, mitochondrion, plastid	94.24	58.42
CDY03033	Canola	plastid	81.48	50.38
ATCG01110.1	Thale cress	cytosol	81.07	50.13
KRG99586	Soybean	cytosol, mitochondrion, plastid	51.44	37.54
Solyc02g011810.1.1	Tomato	cytosol	8.23	35.71
VIT_10s0116g00060.t01	Wine grape	plasma membrane	59.26	32.65
TraesCS4D01G160900.1	Wheat	cytosol	9.88	21.05
TraesCS1D01G258400.1	Wheat	cytosol	10.29	16.23
TraesCS4D01G138800.1	Wheat	cytosol	10.29	16.23
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	18.52	15.79
TraesCS7D01G075700.1	Wheat	cytosol	9.88	15.58
TraesCS6D01G139500.1	Wheat	golgi, plastid, unclear	25.1	15.1
TraesCS3D01G410700.1	Wheat	mitochondrion	19.34	14.64
TraesCS3D01G177500.1	Wheat	cytosol	2.06	7.04
Solyc07g032420.1.1	Tomato	cytosol	2.06	2.69
CDX95225	Canola	cytosol	0.0	0.0
CDY21194	Canola	cytosol	0.0	0.0
VIT_06s0004g07410.t01	Wine grape	cytosol	0.0	0.0
CDY19659	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS5D01G376800.1	EnsemblPlantsGene:TraesCS5D01G376800	Gene3D:1.10.645.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016651	GO:GO:0048038	GO:GO:0051287
GO:GO:0055114	InterPro:IPR038290	InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PANTHER:PTHR11993
PANTHER:PTHR11993:SF27	PFAM:PF00346	SUPFAM:SSF56762	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:+:449149761..449150942

Molecular Weight (calculated)

28398.4 Da

IEP (calculated)

6.087

GRAVY (calculated)

-0.352

Length

243 amino acids

Sequence
(BLAST)

001: MRMMHNYFRI GGVAADLPYG WIDKCLDFCD YFLRGVVEYQ QLITQNPIFL ERVEGVGFIS GEEAVNWGLS GPMLRASGLQ WDLRKVDPYE SYNQFDWKVQ
101: WQKEGDSLAR YLVRIGEMRE SIKIIQQAVE KIPGGPYENL EVQRFKKEKN SEWNDFEYKF LGKKPSPNFE LSRQELYVRV EAPKGELGIY LVGDDSLFPW
201: RWKIRPPGFI NLQILPQLVK KMKLANIMTI LGSIDIIMGE VDR

Best Arabidopsis Sequence Match ( ATCG01110.1 )
(BLAST)

001: MKRPVTGKDL MIVNMGPHHP SMHGVLRLIV TLDGEDVVDC EPILGYLHRG MEKIAENRAI IQYLPYVTRW DYLATMFTEA ITVNGPEQLG NIQVPKRASY
101: IRVIMLELSR IASHLLWLGP FMADIGAQTP FFYIFREREF VYDLFEAATG MRMMHNFFRI GGIAADLPYG WIDKCLDFCD YFLTEVVEYQ KLITRNPIFL
201: ERVEGVGIIG GEEAINWGLS GPMLRASGIP WDLRKIDRYE SYDEFEWEIQ WQKQGDSLAR YLVRLSEMTE SIKIIQQALE GLPGGPYENL ESRGFDRKRN
301: PEWNDFEYRF ISKKPSPTFE LSKQELYVRV EAPKGELGIF LIGDQSGFPW RWKIRPPGFI NLQILPELVK RMKLADIMTI LGSIDIIMGE VDR

Arabidopsis Description

NDHHNAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56753]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.